Cottoperca gobio: 115021146
Help
Entry
115021146 CDS
T07513
Symbol
smarcc1
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cgob
Cottoperca gobio
Pathway
cgob03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
115021146 (smarcc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115021146 (smarcc1)
03036 Chromosome and associated proteins [BR:
cgob03036
]
115021146 (smarcc1)
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
115021146 (smarcc1)
Chromosome and associated proteins [BR:
cgob03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
115021146 (smarcc1)
PBAF complex
115021146 (smarcc1)
GBAF(ncBAF) complex
115021146 (smarcc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
115021146
NCBI-ProteinID:
XP_029307181
Ensembl:
ENSCGOG00000005673
UniProt:
A0A6J2RAP8
LinkDB
All DBs
Position
16:complement(2458435..2480916)
Genome browser
AA seq
1124 aa
AA seq
DB search
MATAATTAGGTGSGGPATGPVGGGTAVGRKKDGGPSTKFWESSETISQFETVRQWIGKHY
KKYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFLDFKAAGSLCHILG
SVYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIDQKQASK
LKDIIKRHQGSITDDKSKATHHIYPSASQQEEDEWLRPVLRKDKQVLVHWGLSPDSYDTW
VSAGEVDGDVEDPPSNDRPWKVHAKWVLDTDAFNEWMNEEDYEVDDNKKPVNFRQRIFPK
EEESSRTPDRKERKANSASKKRRRSPSPPSTPAESRKKGGKKGNPGPHWKRRGHRGEEED
TEEDMTKDMDDSSAGASMEEGSVSKNASSKKDSENTPVKGGNMADLDDMEDGSVMSGGKD
DEEQGKAEINRLMDASEDNVTEQTHHIIIPSYGAWFDYNCIHEIERRALPEFFNGKNKSK
TPEIFLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSE
SRPLPMGPPPTPHFTVLADTPSGLMPLNHRPPPIPPQQPMPNFADKCKDKSIDLQNFGLR
TDLYNKKNLKSKAVNSIRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILHFLR
LPIEDPYMESTEASLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAARAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTEAPEAEKVDT
DTDSQQADKAELKDEAEKPSESAEKSDKTEAADKVKKEGSESSEREEENEEGGEAKTAPA
DKDKEEAMETSSSEQEKEEKTSTDEGEEKRKKLEHDIGEGNIATAAAAALASAATKAKHL
AAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHM
EQLKYAEMKARQQMEQQAAAAAAAAAQAQGQGQAPGSGPHSGPPSSGMHPGGPPPHHGPP
VHHGVAPPGAVLHHGYPSMGHHPMGPNHPGQTGPMGPGQPMPGRMMPVPPSAGPPPGGMP
PMMPPRHPGAPNGMYPGPQPAQPEAVPPVPVGPPAPASGRVADN
NT seq
3375 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcggcgacaacggcaggcggaacgggctcaggcggaccggccaccggcccg
gtcggcggcgggactgcagtgggtagaaagaaggacggcggtccgtctacgaaattctgg
gaaagttcagaaacgatatcccagttcgagacggtgcggcagtggatcggaaaacactac
aagaagtatgtccagaatgactccccctccagtaaatccttggcgggcctggttgtccag
ctgctgcagttccaggaggacgcgtttggacgcagggtcaacaatcctgctcttaccaag
ctacctgccaagtgtttcctggatttcaaggcagcagggtctctctgtcacatcttgggg
tctgtctacaagtttaagagcgagcaggggtggcgtagatttgacctgcagaatccttcc
cggatggacaggaacgtggaaatgttcttaaatgtagagaagaacttggtccagaacaac
tgcttgactcgacccaccgtcttcctgtcgccggacatcgaccagaaacaagccagtaag
ctcaaagacattatcaaaaggcaccagggctccattactgatgacaagtcaaaggccacc
caccacatttacccctctgcttcccaacaagaagaagacgagtggcttcgtcctgtcctg
aggaaagacaaacaggtgctggttcactggggtctctccccagacagctatgatacctgg
gtatcggcaggcgaggtggatggggacgtggaggacccacccagcaatgacagaccatgg
aaggtccatgcaaagtgggttttagacactgatgcattcaatgagtggatgaatgaagaa
gactacgaggtggacgacaacaagaagccagtcaacttccgccaaaggatctttcccaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaactctgccagcaag
aagaggaggcgctcaccctctccgcccagcacccctgctgaatcccgcaagaagggagga
aagaaggggaacccagggcctcactggaagcggcggggccacagaggcgaagaagaggac
actgaggaggacatgactaaggacatggacgactcctcagctggtgccagcatggaggag
ggcagcgtgtccaagaatgcaagttcaaagaaagacagtgagaatactccggtgaaagga
gggaatatggccgacttggatgacatggaggatggctctgtgatgtctggtggaaaggat
gatgaggagcagggcaaagctgaaatcaaccgactgatggacgcgagcgaggacaacgtg
actgaacagactcaccacatcattatccccagctacggcgcttggtttgactataactgc
atccatgagattgagagaagagccctgcccgagttcttcaacggaaagaacaagtccaaa
actccagagatattcctggcctaccgtaacttcatgatcgacacatatcggctaaaccct
caggagtacctcacctccacctcctgtcgcaggaacctgaccggggatgtctgtgccatc
atgagggttcatgcattcttggagcagtggggtttagtgaactaccaggtggactctgag
agtcgcccattgccaatgggccccccacccacaccccacttcaccgtgctggctgacaca
ccatctggcctcatgcccctgaaccacagacccccaccgattccccctcaacagccaatg
cccaactttgcagacaaatgcaaagacaagtccatcgacctgcagaacttcggcctccgc
accgacctctacaacaagaagaatctcaagagtaaagctgtcaactccatcagagattgg
accgagcaggagactctgctgctgctggaggctctggagatgttcaaagacgactggaac
aaagtgtcggagcacatcggttcacgcacccaggacgagtgtatcctgcacttcctgcgg
ctgccaattgaggatccatacatggagagcactgaggcctccctgggccctctggcctac
cagcccattcccttcagccagtctggaaaccccgtcatgagcacagtcgccttcttagcc
tctgtggtcgaccccagagtggcgtctgctgccgccagggcagccctagaggagttctca
cgtgtgcgtgaagaagtgccggctgagttggtggaggctcacgtgaagaaggtgcaggag
gcggcgaggagcacggggaaggtggaccccgccttcggcctggagagcagtggcatcgct
ggcaccgcccctgaggaaccagaaaagactgaagccccagaggcagagaaggtagacacg
gacacagactcccagcaggccgataaggcggagttgaaggacgaggcagagaagcccagc
gagtctgcagagaagagtgacaagacggaggccgcagacaaggtgaagaaggagggatcg
gagtcgtcggagcgcgaggaggagaacgaagagggaggggaggccaagacagctccagca
gacaaagacaaagaggaggctatggagacgtcgtcctcggagcaagagaaggaggagaag
acgtctacagatgaaggagaggaaaagaggaagaaactggagcacgacatcggagaggga
aacattgccaccgcggccgcagctgccctggcatctgctgccaccaaggccaagcacttg
gctgcagtggaggagaggaagatcaagtccctggtggctctgctggtggagacccagatg
aagaagctggagatcaagctgaggcacttcgaggagctcgagaccatcatggaccgagag
aaagaggctttggagcttcagcgacagcagctgctcaccgagcgccaggcgttccacatg
gagcagctcaaatacgccgagatgaaggcgaggcagcagatggagcagcaagcggctgct
gcggctgccgctgctgcccaggctcaaggacaggggcaggctcctggatctggaccccac
tccgggcccccttcatcgggcatgcaccctggagggccccctccacaccatggaccacct
gtgcaccacggagtggccccacccggtgctgtcttgcaccacggctacccctcgatgggt
caccaccccatgggcccgaaccacccgggacagactggaccgatgggaccaggccagccg
atgccgggacgtatgatgcccgtcccgccctccgccggcccccctcctggcggcatgcct
cccatgatgcccccacgccacccgggagctcccaacggcatgtaccccggcccacaacct
gcacagcctgaagcggttcctccagttcctgtgggtcctccagcgcccgcgagtggacga
gtggctgacaactaa
DBGET
integrated database retrieval system
