Cottoperca gobio: 115022187
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Entry
115022187 CDS
T07513
Symbol
exosc4
Name
(RefSeq) exosome complex component RRP41
KO
K11600
exosome complex component RRP41
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115022187 (exosc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115022187 (exosc4)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
115022187 (exosc4)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
115022187 (exosc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
115022187
NCBI-ProteinID:
XP_029308963
Ensembl:
ENSCGOG00000022344
UniProt:
A0A6J2RDM5
LinkDB
All DBs
Position
17:9843806..9846169
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AA seq
265 aa
AA seq
DB search
MGNVVQRQTRGALRFEVCGNMAGLELLSDQGYRLDGRKASELRKVQARMGVFAQADGSAY
LEQGNTKALAVVYGPHEVRGLRSRIRHDRAVINCQYSMATFSTAERKRRPHGDRKSTEMS
LHLKQTFEAAVMTQLYPRSQIDIYVKILQSDGGNYSVCVNAATLAVIDAGIPMRDYVCAC
TVGFVDETPLTDLCHAEESGGVSSLALALLPRGGQIALLQMDARLHQDHLESLIEAAMTA
CKGVSKVLDEVVRQHLQEVSVLSGE
NT seq
798 nt
NT seq
+upstream
nt +downstream
nt
atgggtaatgtagtacagcggcagacacgtggggcgttgcgtttcgaagtttgcggaaac
atggcgggtctggagctgctgtcggaccagggttaccgtttagatggaagaaaagcctct
gagctgcggaaggttcaggcccggatgggtgtgttcgctcaggcggacggttcggcgtat
ttagagcagggaaacactaaagctctggctgtggtttacggtccacatgaagtacgaggt
ttacgcagccggattcgtcatgatcgagctgttatcaactgtcagtacagcatggccacc
ttcagcacagcggagaggaagaggagaccacacggggaccgcaagtccactgagatgagc
ctccatctcaagcagacttttgaagctgctgtgatgacccagctctacccacgctctcaa
atagacatctatgtcaagattctgcagtcagacggcggtaactacagcgtgtgtgtgaat
gctgccactctggcggtgattgacgccggcatccccatgagggactacgtgtgtgcctgc
accgtcgggtttgtggatgagacgcccctcactgacctttgccatgcagaggaaagtgga
ggagtgagctctctggccttagcgctgctgccacggggtggacagatcgccctgctgcag
atggacgccagactacatcaggatcacttagagtctctgatcgaagccgccatgacagct
tgtaaaggtgttagcaaggtgctggatgaggttgtgcgacaacatctccaagaagtttct
gtgctctccggagagtga
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