Cottoperca gobio: 115022798
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Entry
115022798 CDS
T07513
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03013
Nucleocytoplasmic transport
cgob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115022798
03015 mRNA surveillance pathway
115022798
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115022798
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
115022798
5.6.2.5 RNA 5'-3' helicase
115022798
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115022798
mRNA cycle factors
Common to processing body (P body) and stress granule
115022798
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
115022798
NCBI-ProteinID:
XP_029309753
Ensembl:
ENSCGOG00000015291
UniProt:
A0A6J2RFU3
LinkDB
All DBs
Position
17:complement(15170454..15187755)
Genome browser
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEGELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
PDGMLQNGDDPVAKASHLLAELNFEEDEEDTYYTKDLPLHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLASPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKIFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSNGRSSDMYFQTHDQIGMIGTGPSPMTSLNIP
IPFNLVMPPIPPPGYMGQVNGPSAGRGGGMKGKGGSGGGGGTRGGRQRHRGNMGNHSGGN
GGADRHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctctcagactctaacgttcctcgacaccgaggaa
ggcgagctgctgggagcggacacccagggctcggagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccaaacccagagtcagctagacaaccaggttaatggc
cctgatggcatgctacagaatggagacgaccctgtggcaaaagccagtcacttgctggca
gagttgaactttgaggaggatgaggaggacacgtactacaccaaggatcttcctttacat
gcctgcagttactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttttgtaatggccggggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggttaccctgcataaagatggccctctgggggaaacggtcctg
gagtgttacaactgtggctgtcgcaatgtcttccttctgggcttcatcccggccaaagcc
gactcagtagtggtgttactgtgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcgcagtggcagcctctcattcaggaccgctgctttctgtcctgg
ctggtgaaaatcccttcagagcaggagcagctcagggctcgtcagatcaccgcccaacag
atcaacaagctggaggaactctggaaggaaaatcccactgcgaccttggaggacttggag
aagcctggtgtggatgaggagccccaacatgtgctgctccgctatgaggatgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggctgactacgataagaaactcaaa
gagtctcagactcaagacaacattactgtcagatgggacttgggcctgaataaaaagagg
attgcttatttcactattcccaagacagattcagacatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagacctggcctctccgtggaaaggcattggacatgtcatc
aaagtccctgataactacggtgatgagattgccatagagctaaggagcagcgccggggct
ccggtggagatccctcacaactttcaggtcgactttgtgtggaagtccacttcctttgac
aggatgcagagtgccctaaagatatttgctgtggacgagacttcagtgtctggttacatc
taccacaagctgctgggacacgaggtcgaggacgtggttatcaagtgccagctgcccaaa
cgcttcaccgctcaaggcctgcctgaccttaaccactcacaggtgtacgctgtgaagacg
gtgctgcagcgtcctctcagtctgatccaggggcctcctggaacggggaagacagtaacc
tctgcgaccatcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgct
cccagtaacatcgccgtcgaccagctgacagaaaagatccaccagacaggcctcaaggtg
gtgaggctgtgtgccaagagtagggaggccatcgactcgcctgtgtccttcctggctctg
cacaaccagacccgtaacatggacagtatgccagaacttcagaagctccaacagctgaag
gacgagactggagaactttcctcctcagacgagaagcgctacagagctctgagacgcacc
gctgagagggagctgcttatgaatgccgatgtgatatgctgtacctgtgttggggcgggg
gatcctcgactggccaaaatgcagttccgctccatcctgattgacgagagcacccaggcc
accgaaccagagtgcatggtacctgtcgtcctgggagccaaacagctgattctggtgggt
gatcactgccagctgggccctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttttggggatccggccaatccgtctgcaggtccag
taccgcatgcacccggccctcagcgcctttccctccaacatcttctatgagggctctctg
cagaacggagtcactgccgcggaccgtgtgaagaaaggctttgacttccagtggccgcag
cccgacaagcctatgttcttttatgtcacccaaggccaagaggaaatagccagctctgga
acatcttatctcaacaggactgaagcagccaatgtggagaaaataaccacaaggttgctg
aaggctggagcgaaacccaatcagattggcatcattacgccctacgagggacagaggtcc
tacctggtgcagtacatgcagttcagcggctcccttcataccaagctctaccaggaggtg
gagatagccagtgtagatgcctttcaaggcagagagaaggacttcatcatcctgtcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaacgatcccagacgtctcaatgtg
gcactcactagggcgaggtatggtgtgattatagtgggaaaccccaaggccctgtccaag
cagcctctgtggaaccacctgttgaactactacaaggagcagaaggtcctggttgaaggg
ccccttaacaacctgagggagagcctcatgcaattcagcaagccccgcaagctcgtcaac
accatcaaccctgggggtcgattcatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtgtatgaccgcagcaacggacgttcgtccgatatgtatttccagact
catgaccagattggtatgatcggcaccggccccagtcccatgacttccctgaacatcccc
atcccctttaacctcgtgatgccccccatacctccacccgggtacatgggacaggtcaat
ggaccatcagcaggtcgtggtggagggatgaaaggcaagggaggcagtggaggaggcggc
gggactcgaggtggccgtcaaagacaccgcggcaacatggggaaccacagcggagggaat
ggaggagccgaccggcatggaggccacatgagtggcagccaggccagccaggacctgggc
tcccagtcgttctcccaggggccgctgacgcagggctacatcaacatgagccagccgtct
cagatgagccagcccgggctctcccagcctgaactttcacaggacagttacctaggagac
gagttcaagtcccagattgatgtggcgttgtcccaggactccacctaccagggggaacgg
gcctaccaacacggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
