KEGG   Cottoperca gobio: 115022908
Entry
115022908         CDS       T07513                                 
Symbol
col6a1
Name
(RefSeq) collagen alpha-1(VI) chain
  KO
K06238  collagen type VI alpha
Organism
cgob  Cottoperca gobio
Pathway
cgob04510  Focal adhesion
cgob04512  ECM-receptor interaction
cgob04518  Integrin signaling
cgob04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:cgob00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    115022908 (col6a1)
   04518 Integrin signaling
    115022908 (col6a1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    115022908 (col6a1)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    115022908 (col6a1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:cgob04147]
    115022908 (col6a1)
   00536 Glycosaminoglycan binding proteins [BR:cgob00536]
    115022908 (col6a1)
Exosome [BR:cgob04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   115022908 (col6a1)
Glycosaminoglycan binding proteins [BR:cgob00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   115022908 (col6a1)
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   115022908 (col6a1)
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3
Other DBs
NCBI-GeneID: 115022908
NCBI-ProteinID: XP_029309877
UniProt: A0A6J2RK42
LinkDB
Position
17:18884671..18911026
AA seq 1008 aa
METLRGLLALLCVVLVGAQTQIQKKKFADCPVDLFFVLDTSESVALRQKPPNFYIDQIIN
FTITFIDELKEMNHQCDRVLTWNSGALHYSDDVKLVRQLSDLRTQRDALKANIKGIDYIG
KGTYTDCAIKKGLAELLIAGSHYHENKYIVVVTDGHPITGYKEPCGGVQEAANEARQNGV
KVFAVAISPDQEDTRLSLIATNPNYRQNFTAADDTRSTKMQTIRTIIDMITNETKDMCCS
FDCNAPGGPKGPNGDLGSKGETGRPGMPGEKGDIGAMGSVGDPGPVGYTGMKGDRGGKGG
KGDRGHKGFKGDKGQSGNDGIDGRKGEDGFSGLPGCKGSPGSDGLQGESGPKGDSGPYGL
KGGNGDPGKDGEPGRPGNYGPLGPAGVAGPRGNNGDKGERGDDGAPGQDGNRGETGQFGE
KGEQGSRGNRGRRGELGEPGPRGEQGREGSSGSNGDPGVPGRDGSPGYRGDEGAPGPEGA
KGPRGIKGAPGDRGQIGERGEDGVAGNGTAGCPGFQGYPGPRGDAGEPGGKGTPGPKGDD
GDAGDPGPDNTEPGPAGAKGAKGHRGPEGRPGPDGPPGPPGTDECEILDIIMKLCSCCEC
KCAPMDLAFIVDSSESIGATNFALAKDFIISIIDRLSKDQQLKFAGNESGLSVVQYSGSQ
AQEVVRLRPGFGLTAFKQTVRDLKWLAEATYTGEALDFALSNTINLMTHDNKIVIVLTDG
RSDISRDKVPLNVLCGKQLRVGGLGVKDYSGREPNHEQLGELVCKSDPKPGFSFVLDNYA
ELLDDSFLQNLTSRICEEKRCPDYKCPISFSESADILVMMDSSASVGQKNFETSKTFVTR
LAERFLTGERKRGATVKVGVAQYSRNSRMEQAPTANLTMLTYQTEQAAFQNDGTNVLEAM
EFAIKNLRGRGDASGGKKKLVLFSDGRSQSVTGPLLEERAREVAEAGVELFVITVGSQVN
EANLRTLVSRGRQDDISYAQRHLFRVPDYASLLRGVFHQTVSRRVSMP
NT seq 3027 nt   +upstreamnt  +downstreamnt
atggagactctcagaggtctcctcgcgctgctctgcgttgtcctggtcggagcgcaaacg
cagatccaaaaaaaaaagtttgcggattgtccggttgaccttttctttgtactggataca
tctgagagtgtcgccctcagacagaaacctcccaacttttatattgaccagatcataaac
ttcaccattaccttcatagatgaactcaaggaaatgaaccaccagtgtgaccgcgtcctg
acgtggaactcaggagcactgcactacagtgacgatgtcaaacttgtgcgacagctgagt
gacttgagaactcagcgtgatgccctgaaggctaacatcaagggcatcgactacatcggc
aagggcacttatactgactgtgccatcaagaagggccttgctgagctgctcattgcgggc
tcccactaccatgagaacaagtacattgtggtagtgaccgatggccatcctattactggt
tacaaagagccatgtggaggcgtgcaggaggctgctaatgaagccaggcaaaatggagtc
aaagtgttcgctgtcgccatctcacctgaccaggaggacaccaggctgtcactcattgcc
acaaatccaaactacagacaaaacttcactgctgcagacgacaccagatccactaagatg
caaaccattcgaaccatcattgatatgatcacaaacgagacaaaggatatgtgttgctct
ttcgactgcaatgctccaggagggcctaaaggaccaaacggagatcttggctctaaggga
gaaacaggtcgaccagggatgcctggagagaaaggagatattggtgccatgggcagcgtt
ggagatcctggtccagttggttacactggaatgaagggagaccgtggtggcaagggagga
aagggtgacagaggacacaaaggcttcaagggagacaaaggtcaaagtggaaatgatgga
atcgatggccgcaagggtgaggatggtttctctggtcttcccggctgtaaaggatctccc
ggatcagacggcctgcagggagagtctggaccaaagggagactccggtccttatggactg
aaaggaggaaacggagatcctggaaaagatggtgaaccaggaaggcctggaaactacggt
ccactgggacctgcgggtgtggcgggccctcgcggaaacaacggggacaaaggagagcgc
ggcgacgatggtgcacctggacaggatggaaatcgcggcgagaccggacaatttggagag
aagggcgagcaaggttcccgtggaaacagaggccgtagaggagaattgggggagccagga
ccccgtggagagcaggggcgggagggctcatctggctccaatggagaccctggtgtgcct
ggcagggacgggtctcctggctacagaggagatgaaggcgcacctggaccagaaggagcc
aaaggaccgagaggaatcaaaggagctccgggagacagaggccagattggggagagagga
gaagatggtgtggcaggaaatggcactgcaggttgtcctggtttccagggttatcctggg
ccccgcggagacgctggtgagccgggtggcaagggaacccctggacccaaaggagatgat
ggagatgccggagatccaggccccgataacaccgaaccaggacctgcaggagctaagggg
gccaaaggtcacagaggacccgagggcagaccgggacctgacgggcctcctggaccacca
ggaactgatgaatgtgagattctggatatcatcatgaagctctgctcttgttgtgagtgt
aagtgtgcaccgatggacctggcgttcattgtggacagctcagagagtatcggtgccaca
aactttgctctcgccaaagactttatcatctcaatcattgacagactgtccaaagaccag
caactcaagtttgcaggtaatgagtccggcttgagtgtagtccagtacagcggatcacaa
gcccaagaagttgtccgactgagacccggcttcggcctcaccgcatttaaacagacagtg
agagacttgaaatggctggctgaggccacgtacacaggcgaggcccttgattttgctctg
tccaacacaatcaaccttatgacgcacgacaacaaaatcgtcatcgttctcacagacgga
cgttctgatatttccagggacaaggttcccctcaacgtactctgtgggaaacaactccgg
gtgggtgggctaggagtgaaggactactccggccgcgagcccaaccacgagcagcttggg
gaattggtttgtaagagtgatcccaaaccaggcttttcctttgtcctggacaactacgcc
gagctgctggatgactctttcctgcagaacctcacatccagaatctgtgaagaaaagagg
tgcccagactacaaatgtcccatctctttctctgaaagtgccgatattttggttatgatg
gacagctcggccagtgtgggccagaagaacttcgagaccagcaagacctttgtcacccgc
ttggccgagcgttttctgactggcgagaggaagagaggtgccactgtcaaagtgggtgtg
gcccagtacagccgaaactcccgcatggagcaggcgccaactgccaatttgaccatgttg
acctatcaaactgaacaggcggccttccagaatgacggcaccaacgtgttagaggccatg
gaatttgctattaagaatttgcgtggccgcggggatgcatcgggaggcaagaagaagctg
gtgctgttctctgacggcaggtctcagtccgttaccgggcccctgctggaggagcgtgct
cgtgaggtggcagaagccggggtggagctctttgtcatcaccgtaggcagccaagtcaat
gaggccaacttgcgcacgctagtgagcagggggcggcaagacgacatctcctacgcccag
cgccacctgttccgagtcccagactacgcctctctgctccgcggggtcttccaccaaacc
gtctcccgcagggtgtccatgccctga

DBGET integrated database retrieval system