Cottoperca gobio: 115023473
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Entry
115023473 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03020
RNA polymerase
cgob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
115023473
09124 Replication and repair
03420 Nucleotide excision repair
115023473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115023473
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115023473
Enzymes [BR:
cgob01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
115023473
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
115023473
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
115023473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_R
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
115023473
NCBI-ProteinID:
XP_029310338
Ensembl:
ENSCGOG00000007136
UniProt:
A0A6J2RHG1
LinkDB
All DBs
Position
18:complement(9646687..9659301)
Genome browser
AA seq
1966 aa
AA seq
DB search
MHGPPSGDSACPLRTIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVTKIMKVLRCVCFFCSKLLVDSN
NPKIKDILIKSKGQPRKRLTHVYELCKGKNICEGGEEMDNKFGMEQHENEEDISKEKGHG
GCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEEDFILGMDPKF
ARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAHV
IAEDVKLLQFHVATMIDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFS
ARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIRD
NGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTF
RLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTL
TAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAIIKPRPLWTGKQIFSLIIPGHINV
IRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHISYLEMGH
DITRLFYSNIQTVVNNWLLIEGHSIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAHN
NELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINIS
QVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMG
GREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDGTVRNSINQVVQLRYGEDGLAGENVE
FQNVATLKPSHKAFEKKFKFDCTNERALRRMLQEDVVKDVLTNAIVQSSLEKEFDRLKED
REVLRAIFPTGDSKVVLPCNLARMIWNAQKIFRINIRTPTDLNPLRVVEGLHDLSKKLVI
VNGEDPLSKQAQQNATLLFNIHLRSTLCSKRMTEEFRLTTEAFDWLLGEIETKFNQSIAH
PGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTVF
LLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQNTVVAEDQEWVNVYYEMPDF
DVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIM
NSDENKFQEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIII
TEEGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALEREL
NHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLMEA
SSHAESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPSGMF
FGTVPSPMSGMSPAMTPWNTGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYS
PAWSPTPGSPGSPGPASPYIPSPGGAMSPNYSPTSPAYEPRSPGGYTPQSPGYSPTSPSY
SPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYS
PTSPSYSPTSPNYTPTSPSYSPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSP
SYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSP
TSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPTYTPTSPKYSPTSPTYSPTSPK
YSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSPAISPDDSDEENN
NT seq
5901 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcacgatcaagagagttcaa
ttcggcatcatcagcccagatgagcttaaacggatgtccgttacggaggggggaatcaaa
taccccgaaacaacagaaggaggacgtcctaaacttggtggccttatggacccaagacaa
ggggtcatagaacgatctggaagatgtcagacatgtgcaggcaacatgacagaatgccct
ggccactttgggcacatagaactggcaaagccggttttccacgtcggcttcgtaacaaag
attatgaaggttcttcggtgtgtctgcttcttttgctcaaagctactagtggattcgaac
aatccaaagattaaagacatcctcataaaatcaaaagggcagcccaggaaacgtttgaca
catgtgtacgagctgtgcaaaggaaaaaatatctgtgaaggaggagaggagatggacaac
aaatttggaatggaacagcatgagaacgaggaggacatttccaaggagaagggccacggt
ggctgtgggcgataccagccacgcatcagacgctctggcttggagctgtatgccgagtgg
aagcacgttaatgaggattcgcaggagaagaaaatcctcctgagtcccgagcgtgtgcac
gagatcttcaagcgcatctcggatgaagaggacttcatcttgggcatggaccccaagttt
gcccgaccggaatggatgattgtaacggtgttgcctgtgcctccactggctgtcaggcct
gctgtggtcatgcagggatctgctcgcaaccaggatgacttgacccacaagctggcagat
atcgtcaaaatcaacaaccagctgagaagaaacgagcagagtggtgctgcagctcacgtc
atcgctgaggatgtcaaactgctccagtttcacgtcgccaccatgattgacaacgagttg
ccaggcctgccaagggcaatgcaaaagtctggccgccctctcaaatccttaaaacaacgt
ctaaaggggaaggaggggcgagtccgaggtaacctcatgggcaagcgtgtggacttctcc
gcacgaactgtcatcacccctgaccccaacctgcagatcgaccaagtgggcgtacctcga
tccatcgcagccaatatgaccttcccagaaatagtcacaccctttaacatcgacagatta
caagagctggtgcgaagaggcaacagccagtacccgggagccaaatacatcatccgggac
aatggagacagaattgacctgcgattccaccccaaaccaagtgaccttcacctgcagatt
ggctacaaggtggaaagacacatgtgtgacggtgacatcgtcatcttcaacagacagcct
acactacataaaatgtccatgatggggcacagggtgcgaattcttccgtggtccacgttt
cgactcaacctcagtgtcacaactccatacaacgctgactttgacggggatgagatgaac
ctccacctgcctcagtccctcgagacgagggcagagatccaggagctggccatggtgccg
cgtatgatcgtcacaccccagtccaacagacccgtcatgggtatcgtgcaggacacgctc
acggctgtccgcaagttcaccaaaagagatgtcttcttagagaggggtgaagtgatgaac
ctcctcatgttcctctccacttgggacgggaaagtgcctcagccggccatcatcaagcct
cgtcctctgtggacgggcaagcagatcttcagcctaatcattcccggacacattaatgtg
atccgcacacacagcacccatcctgacgaagaagacagtggcccttacaagcacatctcg
cctggggacaccaaggtcatagtggagaacggggagttgatcatgggcatcctgtgtaag
aaatccctggggacctcagccggatccctcgtccacatctcctacctggagatgggccac
gacatcaccagactcttctactccaacattcagaccgtggttaacaactggctgctcatc
gagggtcattccattggtattggtgactccattgctgatgccaagacctacctcgacatc
cagaacaccatcaagaaagccaaacaggatgtgatagaagtcatcgagaaagcccacaac
aatgagctggagccgacccctggtaacacgctgaggcagacctttgagaaccaggtcaat
cgtatcctcaatgacgctcgtgacaaaacgggatcctctgcccagaagtctctgtctgag
tacaacaacttcaagtccatggtggtggctggttctaagggctcaaagattaacatctcg
caggttattgccgtggtggggcagcagaacgtggagggtaaacgaatccccttcggcttc
aaacaccgcacgctgcctcacttcattaaggatgattacggtcctgagagtagaggcttt
gtggagaactcctacctggctggcctgacccctacagagttcttcttccacgctatggga
ggcagagagggtctgatcgatacagctgtgaagacggctgagactggttacatccagcgg
cgtctgatcaagtccatggagtcggtgatggtgaagtacgacggcacggtgcgtaactcc
atcaaccaggtggttcagctgcgttacggcgaggacggcctggcaggagagaacgtcgag
ttccaaaacgtggcaacgctcaaaccctcgcacaaggcctttgaaaagaagtttaagttt
gattgcaccaatgagcgagcgctgaggcggatgctgcaggaggacgtagtaaaagacgtg
ttgaccaatgccattgtgcagagttccttggagaaggagtttgataggctgaaggaggac
agggaggtcctccgagccattttccccactggggacagtaaggtggtgctgccatgcaac
ctggccagaatgatctggaacgctcagaagatcttccgcatcaacatccgaaccccaaca
gacctcaatcctctaagggtggtcgagggtcttcatgatctgagtaaaaagctggtgatt
gtgaacggcgaggacccgctgagcaaacaggcccagcagaacgccactctgctcttcaac
atccacctgcgctccaccctctgctccaaacgcatgaccgaggagttccgcctcaccact
gaggctttcgactggctgctgggagagatcgagaccaaattcaaccagtccatcgcccac
ccaggtgaaatggtcggcgctctggctgctcagtcgctgggagagcctgccacccagatg
accctgaacactttccattacgccggtgtgtcagccaagaacgtaacactcggtgtgcct
cgtctaaaggagttgatcaacatctccaagaggcccaaaacaccctcgctgactgttttc
ctgctgggtcaggcagcccgtgacgccgagagggccaaggacatcctctgtcgactggag
cacaccacactgcgaaaggtgacggccaacaccgccatctactacgaccccaacccccag
aacacggtggtggccgaggaccaggagtgggtgaacgtctactacgagatgcccgacttt
gacgtgacgcgcatctcgccgtggctgctgcgcatcgagctcgaccgcaagcacatgacc
gatcgcaagctgactatggagcagattgcagaaaagatcaacgcaggtttcggagatgat
ctgaactgcatcttcaatgacgacaacgccgagaagctcgttctgcgaatccgaatcatg
aacagcgacgagaacaagttccaagaggatgaggaggtggtggacaaaatggacgatgac
gtgttcttgaggtgcatcgagtccaacatgctgacagacatgaccctacaaggcatcgag
cagatcagcaaggtgtacatgcacttgccccagactgacaataagaagaagatcatcatc
acagaggaaggtgagttcaaggcgctgcaggagtggatccttgagacggacggcgtgagc
ctcatgagggtcctcagcgagaaggacgtagatcccgtcaggaccacctccaacgacatt
gtggagatcttcacggtcttgggaattgaggcagtgcgaaaggctctggagagggagttg
aaccacgtcatctcctttgacggttcctacgtcaactaccgtcacttggctctgctttgt
gacaccatgacctgccgcggccacttgatggccatcacgcgtcacggcatcaaccgtcaa
gacacgggaccactcatgaagtgttcctttgaggagacggtggatgtgttgatggaggcg
tcgtcccatgctgagagtgaccccatgaagggtgtgtcggagaacatcatgcttggccag
cttgccccggctggtacaggatgctttgatttgctgttggacgcagagaagtgtaaatat
ggcatggagatccctacaaacattcctggcatcagcgtggctggacccagtggaatgttc
tttggcacggtgccgagtcccatgagtggtatgtcacctgccatgaccccatggaacaca
ggagcaacacctgcctacggtgcctggtcccccagtgtcggaagcggcatgacccctggg
gcagcaggtttctcccccagtgcggcatcagacgcaagtggcttctctccaggctattcc
cctgcgtggtctcccacccccgggtctccaggatctccaggacctgccagcccgtacatc
ccgtctccaggtggagccatgtcacccaactactcccccacctccccggcctacgagcct
cgctcccctggaggctacaccccacagagccccggctactcccccacatccccctcctac
tcccccacttctccctcttactccccaaccagccccaactacagcccgacatctccttcc
tactctcccacctctcccagttactccccgacctctccgtcttattccccaacgtctccc
tcctactcccccacctccccgtcttactcccccacctccccgtcttactcccccacctcc
ccctcctactctccaacctcgccgagctacagcccgacatcgccgagttacagcccgacg
tcacccagctactcccccacctcaccttcttactcccccacctccccctcttattcccca
acctctccatcttactcccccacctccccgtcctactcgcccacctctccttcctactca
ccgaccagtccgagctacagcccgacatcgccgaactacacgcccacctcgcccagttat
tcccccacctccccttcttactccccaacatcgccctcttactccccaacctctcccaac
tacacccctaccagccccaactactcccccacctctccctcgtactcccctacctctccg
tcctattccccctcaagtccgcgctacaccccgcagtcgcccacctacacacccagctcc
ccctcatacagccccagctctccctcctactcccccacctcacccaaatacaccccaact
tccccctcatacagcccaagctccccggagtacacccccacctctcccaagtactccccc
acctcgccaaagtactccccgacgtcgccgaagtactccccgacttctcccacctactcc
ccaacgactccaaaatacagccccacctctccaacctactcccctacctcccccacctac
acccccaccagccccaaatactcccctacctcccctacttactccccaacttcacccaag
tactcccccacgtctcctacatactcgccaactagtcctaaaggctccacgtacagcccc
acctccccaggatacagccccacctcgcccacctacagcccggccatcagcccagatgac
agcgatgaagagaacaactga
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integrated database retrieval system
