Cottoperca gobio: 115023513
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Entry
115023513 CDS
T07513
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04382
Cornified envelope formation
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115023513 (col4a5)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115023513 (col4a5)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115023513 (col4a5)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115023513 (col4a5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115023513 (col4a5)
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115023513 (col4a5)
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115023513 (col4a5)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115023513 (col4a5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115023513
NCBI-ProteinID:
XP_029310405
UniProt:
A0A6J2RM36
LinkDB
All DBs
Position
18:complement(13704330..13735708)
Genome browser
AA seq
1688 aa
AA seq
DB search
MIKDLKSLRQLAVPLLFIALCVAVQRSDSAACHGCVGSKCDCSGVKGGKGERGFPGLTGQ
PGVPGFPGPEGPTGPRGEKGTDGPHGLYGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPGP
RGVPGCNGTKGDLGYPGSSGIPGQQGRLGPPGLPGQKGDPGDVISTNRFGEKGAVGLPGL
PGNTGSSGPPGLQGPLGPPGPRGGEGRPGPPGLPGPKGNMGLNFQGPKGEKGDQGLQGPP
GPPGQVGEQKRPPETQIQRGDKGDPGFSGPAGDPGYPGPPGPSGGQRGDKGEPGEAGKRG
KPGKDGDPGSSGFPGGKGDSGLPGPPGRDGERGFKGETGYPGPPGLVIGEQAGGQVGSKG
EPGYPGSSGHKGDRGPAGLSGPPGAPGPPATGGSGQPGSPGFPGERGQKGESGVPGLSLP
GPPGRSGSNGGQGQPGPPGPPGFSTARQNCVGGEPGRPGVQGERGYPGESGQKGDKGETC
VNCFGGTSGIPGPTGPAGQPGFPGSPGGQGGKGDRGYPGTPGGVGPPGTSGPQGSPGFPG
EKGDPGDAITVSGGRGDKGDTGFPGSSGLPGLDGRPGRDGQPGSPGAKGTPGSLLVKGER
GLPGDSGSPGLPGDRGPPGGPGFGPQGSKGEKGIQGVSGRSGGPGAPGTKGEPGLTVAEK
GLPGPRGLDGSSGQPGSPGSPGQPGQNGFPGLPGMKGDPGLTGIGLPGSPGAKGFPGIPG
QSGAPAGPGRPGVDGLPGQPGFSGPKGEPGFGLPGPPGLPGVPGSKGFTGTKGDPGFPGG
PGSPGRSGFDGSVGTKGEAGTPGIPGSRGPPGSPTSGSLGQPGPPGPSGPMGPPGFPGSN
GGKGDPGPPGLDIPGLPGDRGSPGFPGSAGSLGTPGPPGGPGRDGLPGLPGTKGDMGSMG
TPGPSGGPGGPGGPGGSGQKGETGFSGRDGVPGGPGGKGERGDPGVQGPPGSSQPPLATK
GTKGDPGLPGGPGLPGQKGIPGLSGDPGLSGSDGRPGLPGPPGPKGDSGIPGGPGGPGGS
GAKGGMGEMGFPGPSGQKGLPGQPGRSGTPGQSGGPGFPGSKGEPGSAGVGPPGSSGFKG
EPGQPGFPGSSGLKGTPGSPGLSGIPGGPGIKGDPGLPGFQGSPGIPGPKGLDGGPGGPG
LTGASGRPGESGRPGGSGSPGEKGQAGRDGIPGPAGVKGDPGLPGYGGPGAPGLPGLPGS
KGDPGLSGSSGSPGFPGPKGDAGFPGNSGPSGNSGPPGPPGLALQGPKGLHGPPGPPGRA
GPAGPPGSSGPQGPRGPSGSGGVKGDKGIPGAPGQPGFSGQKGDGGTPGFPGSSGLPGGS
GQKGDIGLPGVPGFPGPKGDSGLPGGSGLPGDPGDIGATGPPGDPGVPPTPIVVKGERGP
SGPQGLPGSRGAPGSPGREGLPGQPGDPGDSGLEGPPGFSGPGGRKGDNGPAGQPGQRGY
PGPSGSDGPQGLPGSPGSVSAAHGFLITRHSQAHEVPYCPEGTSLIYDGYSLLYVQGNER
AHGQDLGSAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPEPMPSSMAPITGEGI
KPFISRCSVCEAPAMVIAVHSQTIQIPTCPANWEALWIGYSFMMHTSAGAEGSGQALASP
GSCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEPSEMFRKPQSETLKAGNLRTRVSR
CVVCMKRT
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagacttgaagagcctgcgacagctcgccgtgcctctgctcttcatagcactg
tgcgtcgcggtgcagcgatccgactctgcggcttgccatggatgtgtgggatccaaatgt
gactgcagtggagtaaaaggaggcaagggtgagcggggtttcccaggcctcaccggacag
ccaggagtcccaggattccctggacctgaggggccgaccggacccagaggagagaagggt
accgatggacctcatggattatacggtccaaaaggaataagagggccgtctggattgcca
ggatttccaggaacgccaggactacccggtttgcccgggcaggacggacctccaggtccg
aggggagtgccggggtgcaatgggacaaagggtgacctcggttacccaggaagctcagga
atccccggacagcaaggacggctgggtcctcctggtctgccaggacaaaagggcgaccca
ggtgatgtgatctccaccaatcgtttcggagagaaaggagcagtgggattacccggatta
ccgggaaatactggatcttccggaccccccggcttgcaaggccccctcggccctcccgga
cccagaggtggtgagggtcgtccaggtcctccaggtctgcccggaccaaagggaaacatg
gggttgaacttccaaggacccaaaggagagaagggggatcaaggtctgcaaggacctcct
gggcctccagggcaagttggagaacagaagaggccaccagagactcagatccagagagga
gacaagggtgaccccgggttttcaggtcctgcaggtgatcctggatatccaggaccccct
ggtccctcaggtggccagagaggagacaagggagagccaggagaagcaggcaaacgaggc
aaaccaggcaaagatggcgaccccggttcttcaggcttccctggaggcaaaggggattca
ggcctgccaggtcctccgggcagggatggagagagaggattcaaaggtgagactggatac
ccaggcccaccaggattggttattggcgagcaggcaggggggcaggttggctctaaaggt
gagcctggctaccccggatcatctggacacaaaggagatagaggaccagcaggtttatca
ggacctccaggagcaccaggacctccagctactggtggtagtgggcagcccggatctcca
ggcttcccaggagagagaggtcagaagggagaatccggcgttccagggctgtctttgcca
ggtcccccaggacgttcagggtccaatggcggccagggtcaaccggggccccccggacct
ccaggcttttccacagcaagacaaaactgcgttggtggagagcccgggcgtcccggcgtg
cagggagagagaggttacccaggagagtctggccagaaaggtgataagggcgagacctgc
gtcaactgcttcggtggtaccagtggcatcccaggacccacgggacctgcaggacaaccc
ggattccctggatctcctggcggccaaggtggcaaaggagacagaggatatccaggaaca
cctggtggtgttggaccccctggtacctccggccctcaaggttctccaggattccccgga
gagaagggagacccaggcgatgccatcacagtcagcggtgggaggggagataagggtgac
accggcttccccgggtcatccggtcttcccggtctggacggtcgacccgggcgcgacgga
cagcctggatctcctggagcaaaaggaactcctggctctctgctggtgaaaggagaacga
ggtctccccggtgactcgggttccccaggtcttccaggagacaggggtcctccaggaggc
cctggcttcggacctcagggatctaaaggagaaaaaggtatccagggagtctcaggacga
tctggaggtcccggtgcacctggtactaaaggtgaacccggcctgacggtggccgagaaa
ggcttaccaggacccagaggactggatggctcttcaggacagcccggctcaccaggtagc
ccaggtcagcccggacagaacggtttccctggtttaccaggaatgaagggtgatcctgga
ctcacaggcatcggactcccaggatccccaggagctaaaggattcccaggtatccccggt
cagtcaggagctcctgcaggaccaggaagaccaggagtagatggtctccctggccagcct
ggattctctggacctaagggcgaacccggctttggccttccaggccccccaggtttacca
ggagtacctggatctaaaggattcaccggaacaaagggagatcctggcttccctggcggc
cccggttcacctggacgatctggatttgatggctctgtgggaactaaaggtgaggccggt
acacctggtatacctggaagtcgtggcccacctggatcccccacctccggctcactgggg
cagccaggcccccctggaccctccggcccaatgggacccccaggattccctggatcaaac
ggagggaagggagaccccggccctccaggtctagacatcccaggtctgccaggagacaga
ggaagtcccggtttcccaggttccgcaggatcactcggaaccccaggaccccctggaggc
cctgggcgggatggcctgcctggactgccgggtacgaaaggagacatgggatccatggga
actccaggaccttctggaggaccaggaggacccggtgggcccggtggttcaggacagaaa
ggtgaaactggattctcaggcagagacggcgttcccggcggtcccggtggtaaaggagag
agaggcgaccccggcgtccagggacccccaggaagcagccagccaccattggccacaaag
ggaaccaaaggagatccaggactaccaggtggaccaggtcttccaggtcagaaaggcatc
cctggtctctccggtgaccccggcctgtcaggatcagacggacgccctggactccccgga
ccaccaggtcccaagggagattctggaatcccaggaggcccagggggtcctggaggttca
ggagctaaaggcggcatgggagaaatgggatttccaggaccgtcagggcagaagggctta
ccaggtcagccaggtaggtctggaaccccgggacagtcaggaggacctggtttccctgga
agcaaaggtgaaccaggctctgcaggagttggaccacccggatcatccggatttaagggt
gaaccaggtcagccagggttcccaggaagttcaggacttaaaggaactccaggatcaccc
ggtctctcaggaataccaggaggaccaggtattaaaggcgaccccggactcccaggattc
caaggttctcccggtatccccggtcctaagggtctcgacggtgggcccggtggcccaggt
ctcactggagcttccggtagaccaggagagtctggcagaccaggaggatcaggatcgcca
ggagagaagggtcaggcaggtcgggacgggatcccaggaccggctggagtcaaaggagac
ccaggacttcctggttacggtggacccggtgctcctgggcttccagggttaccaggctca
aagggagacccaggtctctccggctcatctggcagtcctggtttccccgggcctaaagga
gatgctggtttccctggcaactctggtccttcaggcaacagcggccctcctgggcctcca
ggactggctctgcagggccccaaaggactccatggaccccctggaccacccggaagagca
ggtcccgcaggtcctccaggttcctctggcccccagggtccccgtgggccctcaggaagc
ggcggcgtgaagggagacaagggtattcccggcgctcctggccagcccggcttctcggga
cagaagggagatggtggcactcccggattcccaggttcctctggtcttcccggcggctct
ggtcagaagggagatatcggtctgcctggcgttcctggattccctggaccgaagggagac
tcgggactccccggtggcagcggcctccctggagatcctggagacattggagccactggc
cctcctggtgaccccggtgtacctcccactcccatcgtggtgaagggagagcgaggaccc
tctggacctcagggcctgcctggcagtcgaggagcacctggttctccaggacgtgaggga
cttccaggtcaacctggggaccccggggattctggtctggagggtcctcctggcttcagc
ggccccggcggcaggaagggagacaacggacctgccggtcagcctggtcagcgtggctac
cccggcccctctggttcagacggtccacagggtcttcccggttctccaggatctgtgtct
gcagcccacggcttcctcatcacccgacacagccaggcgcacgaagtgccctactgtccc
gagggaaccagcctcatctacgacggctactccctgctgtacgtgcagggcaacgagagg
gcgcatggacaggaccttggctcggccggcagctgtctgcgcaggttcagcaccatgcct
ttcatgttctgcaacatcaacaacgtctgcaacttcgcctcccgcaacgactactcctac
tggctgtccacgcctgagcccatgccctcgtccatggcccccatcaccggagagggcatc
aagcctttcatcagcaggtgttcagtgtgtgaagctccagccatggtgatcgcagtccac
agtcagaccatccagattccaacttgccccgcaaattgggaagctctgtggataggatac
tccttcatgatgcacaccagtgcaggtgcagagggctccggtcaggccctggcctccccc
ggctcctgcctggaggagttccgcagcgcccccttcatagagtgccacggcagagggacg
tgcaactactacggcaactcctacagcttctggctggccactgtcgaaccctctgagatg
ttcaggaagccgcagtcggagactctgaaggccggtaacctacggacgcgcgtcagccgc
tgcgtggtctgcatgaagaggacgtaa
DBGET
integrated database retrieval system
