Cottoperca gobio: 115023589
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Entry
115023589 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115023589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115023589
03009 Ribosome biogenesis [BR:
cgob03009
]
115023589
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115023589
Spliceosome [BR:
cgob03041
]
Complex A
U2 snRNP components
U2 related factors
115023589
Complex B
115023589
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
115023589
Ribosome biogenesis [BR:
cgob03009
]
Eukaryotic type
90S particles
Helicases
115023589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
Atrophin-1
AAA_30
Motif
Other DBs
NCBI-GeneID:
115023589
NCBI-ProteinID:
XP_029310539
Ensembl:
ENSCGOG00000012205
UniProt:
A0A6J2RKP5
LinkDB
All DBs
Position
18:complement(2293628..2317014)
Genome browser
AA seq
755 aa
AA seq
DB search
MFKRHRLDLGDDYSPGKKRPSEGRDRDRDRDRDERPRDRDRDRDRDRDRDVKSSSSLAAA
GSGGFVKPTPVQQMVNPYTNLPHTPRYYEILKKRLLLPVFDYRERFTDILMQNQCFVLVG
ETGSGKTTQIPQWCVDMVLSMTGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYA
IRFEDCSSAKTVLKYMTDGRLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVV
RQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVI
QIHMCEVDEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPQQQQRI
FEPPPPNKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTA
ISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGID
DLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCE
FNCSNEILSITAMLSVPQCFVRPTEARKMADESKMRFAHIDGDHMTLLNVYHAFKQNNDS
TQWCYENFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFNSRDYYTNIRRALITGFFMQ
VAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDVKPEWLVK
IAPQYYEMSNFPQCEAKRQLERIIAKVSSKEYTQY
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atgttcaagcgacatcgtttagatttgggtgatgattattcgccgggtaaaaagagaccc
tctgaagggcgtgaccgcgacagggacagagaccgcgatgagcggccgagggaccgcgac
agggaccgggaccgtgaccgggacagagatgtgaagtcatccagcagcctcgccgctgcc
ggcagtggaggcttcgtgaagccgacccccgttcagcagatggtcaacccctacaccaac
ctgccccacacaccacgctactatgagatcctgaagaagcggctgctgctacctgtgttt
gactacagagagcgcttcaccgacatcctcatgcaaaaccagtgttttgtgctggtggga
gagacgggctctggaaaaaccacgcagatccctcagtggtgtgtggacatggtcctgtcc
atgacaggaccaaagagagcagtggcctgcacgcagcccaggagggtcgccgccatgagc
gtcgcccagagggtcgccgatgagatggatgtcatgctgggtcaagaggtgggatacgcc
atcaggtttgaggactgcagctctgccaagacggtactcaagtacatgacagatgggcgg
ttgctgcgggaggccatgaatgatcctctgcttgagcgctatggtgtcatcatcttggac
gaggcccacgagcgcacattagctacagatatcctcatgggagtcctcaaggaggtcgtc
cgccagaggtctgacctcaaggtcatcgtcatgagtgcgacgctcgacgccggcaagttc
caggtgtactttgacaactgcccactgctgaccatccccggacgcacgcatcctgttgag
attttctacacgcccgaacctgagcgggactacctggaggcggccatccgcaccgtgatc
cagatccacatgtgtgaggtggatgaaggagacctgctgctcttcctcactggacaagag
gaaattgatgaagcctgcaagcgaatcaagagggaggtggacgacctcgggcctgaagtg
ggagatatcaagatcatcccgctgtactccacgctgcctccgcagcagcagcagaggatc
tttgagccacccccacctaataaaccaagtggtgccatcggaaggaaggttgtcgtgtca
acaaacatcgcggagacttctctgaccatcgacggcgtggtgtttgtaattgatcctgga
tttgccaagcagaaggtgtataacccacgtatcagagtggaatcccttttggtaacagcc
atcagcaaggcgtcggctcagcagagggcaggccgcgctggacggacgcggccaggaaag
tgtttccgcctttacacagagaaggcgtacaagacagaaatgcaggacaacacgtatccg
gagatcctgaggtctaatctgggctctgtggtgctgcagctgaagaagctgggtattgac
gacctggtgcactttgacttcatggacccaccagccccggagacccttatgcgagccctg
gagttgctgaactacctggcggcgctcaatgacgacggtgacctgacggagctgggctcc
atgatggcagagttccccctggacccccagctggccaagatggtcatcgccagctgtgaa
ttcaactgttcgaacgagatcctctccatcactgccatgttgtcagtcccacagtgcttc
gtccgacccaccgaggctagaaagatggccgacgagtccaagatgcgctttgcccacatc
gatggagaccacatgactctgctcaacgtgtaccacgcctttaaacaaaacaacgactcc
actcagtggtgctatgagaatttcgtcaactaccgctcgctgatgtcggcagacaacgtg
cgccagcagttgtcgaggatcatggaccgcttcaacctgccgcggcggagcaccgagttc
aacagcagagactactacaccaacatccggcgcgcgctcatcaccggcttcttcatgcag
gtcgctcacctggagcgcaccggacattacctgacggtgaaggacaaccaggtcgtgcag
ctgcacccctccaccgtgctggaccacaagccggagtgggtgctgtacaacgagtttgtg
ctcaccaccaagaactacatccgcacgtgtactgacgtcaaaccagagtggctggtgaaa
atcgccccgcagtactatgagatgagtaacttcccccagtgtgaagcaaagagacagttg
gagcgtatcattgcaaaagtctcatccaaggaatacactcagtactaa
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