Cottoperca gobio: 115023821
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Entry
115023821 CDS
T07513
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115023821 (col25a1)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115023821 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
BAF250_C
Motif
Other DBs
NCBI-GeneID:
115023821
NCBI-ProteinID:
XP_029310940
UniProt:
A0A6J2RNP6
LinkDB
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Position
18:complement(2466196..2593191)
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AA seq
672 aa
AA seq
DB search
MEIAEARRASKCVEEMEKEVAPQKRQHYRTTVLNIISSLCSVASIAFCILLSMNTADIKN
RVVDLESGNDEHTLIRAPGYSMDDFNSLIEQRVDELLSQRSYEHFVKIRTARQASPECSC
PPGPPGKRGRRGRNGETGPPGPSGTKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLSGDAGQTGDTGIMGPEGPPG
QKGSLGSPGSAGDDGLKGDVGIPGLDGVPGSKGEMGEQGEKGDLGEDGRKGDLGEKGDAG
STAAGIKGEPGESGRSGMKGEPGLPGLPGLPGIKGEPGFLGPQGDPGLPGLPGTKGERGD
HGPQGKGERGELGPFGPKGSQGETGTPGFKGSKGETGDKGILGSVGLKGPPGQKGDQGAT
EIVDYNGNIQEALQKITTITVTGPPGPPGPIGPEGVKGDRGLPGLPGLDGERGYKGYKGD
MGMPGASGEKGTTGLPGLPGVNGIRGDKGGSGLPGLQGSSIVGTPGAPGPHGPSGPMGPH
GFPGSKGESGLHGVKGVRGEAGHKGDRGPLGLPGASGLDGKPGFRGTDGPAGPAGPAGPK
GDIGERGTSGEPGPRGPYGLPGSAGTPGLDGEKGKKGKKGPKGEKGEQGAPGLDAPCPLG
PDGLPMPGCWQK
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgcggaggcaagaagagcatctaagtgcgtggaagaaatggagaaagaagtg
gcgcctcagaagcgacaacattaccgcacaacagtgctgaacattatctcgtctttatgc
tcagtggcgtccatcgccttttgcattcttctgagcatgaacacagctgatattaagaac
cgggttgtggatttggagagtgggaatgacgagcacaccttgatccgcgcccccggctac
tccatggatgattttaattcattgattgaacaacgagtggatgagctgctctctcagcgc
tcctatgaacattttgtcaagattcggactgcgagacaagcgtcacctgaatgcagctgc
cctccaggacctccggggaagcgaggaagaagaggccgcaatggagaaactggacctcct
ggcccttcaggtaccaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttctgctgaccagcagctcataaagcggcggctc
attaagggagatcaggggcaagctggaccacctgggcctccggggccaccaggccctcca
gggccaagggggcctccaggggacactgggaaagacgggcccagaggtgtacctggtcta
tcaggggacgcagggcagactggagacacaggaatcatgggacctgaggggccaccaggg
caaaagggttcactcgggtctcctggcagcgcaggtgatgatggactgaagggggatgtt
ggcatcccaggattggacggagtccccggatccaagggtgaaatgggggagcaaggtgaa
aagggcgatttgggcgaagacggacggaaaggtgatttaggagagaagggagacgccggc
tccactgcagcaggcatcaagggtgaacctggagagtccgggagaagtggaatgaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggattcctc
ggcccccagggagatccagggctcccaggactcccaggaactaagggggagagaggcgac
cacgggccacaaggaaagggggaaagaggagagcttggaccctttggaccaaagggttca
caaggagagacgggtacacctggttttaaagggtcaaagggtgagactggagacaaagga
atcttgggatctgttggcctgaagggccctcctgggcagaaaggagaccaaggagccaca
gaaattgtcgactacaatggaaacattcaagaagctttacagaagattaccactattaca
gtaacgggtcctcctggaccgcccggcccgattggaccggagggtgtgaagggggatcgt
ggcttgcctggtctccccggactcgatggtgaacgaggttacaaaggctacaaaggagac
atgggaatgcccggagcttcaggggagaaaggaacaactggtttacccggtttacctggt
gtcaacgggatacgaggggataagggaggctcaggtctacctgggcttcaaggatcctca
atcgtcggcacaccaggggcaccaggacctcatggcccctcgggccccatgggcccccac
ggtttccctggatcaaagggggaatctggtttgcatggtgtgaagggtgtcagaggagaa
gcaggacacaaaggggaccgtggaccgctgggtctccccggagcctccggcttggacggc
aagcccggatttaggggtacggacgggcctgcaggtccagctgggcccgctgggccaaag
ggggacataggtgagagaggaacatcaggcgagcctggaccgaggggaccttatggacta
cctggatctgctggaacaccaggcttggatggggagaagggaaagaagggcaaaaaaggg
cctaagggcgagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggc
ccagatggattaccaatgcctggatgctggcagaagtga
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