Cottoperca gobio: 115025077
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Entry
115025077 CDS
T07513
Name
(RefSeq) ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115025077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115025077
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115025077
Spliceosome [BR:
cgob03041
]
Complex C
Other components
Step II factors
115025077
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
S1
WHD_HA2
DEAD
AAA_22
GIPC1_GH2
Flavi_DEAD
AAA_19
ABC_tran
nSTAND3
T2SSE
AAA_16
TsaE
nSTAND_NTPase5
PhoH
AAA_30
Motif
Other DBs
NCBI-GeneID:
115025077
NCBI-ProteinID:
XP_029312987
Ensembl:
ENSCGOG00000021929
UniProt:
A0A6J2RU64
LinkDB
All DBs
Position
19:6807846..6822688
Genome browser
AA seq
1174 aa
AA seq
DB search
MAASDEIKRLEYLSLVSKVCTELENHLGICEKDLAEFIISLAEKHTTFEEFKAVLCENGA
DFTDTFVGNLLRLIHTMRSAPSTSKDHQPPSEKDKLKEKYPALCKPDDPVWMIPPRHTDE
GDEQIAAAAMKELEMLMPNFCGTSSDNGSDRSRDTEGQIRRQRSRSPDGETKPKCKRKRV
SRWSDHPPSPRRDDDNNKKDDRDSDRWRDTPVDRPPPEEPVVGDVYNGKISSIMQFGCFV
QLEGLRKRWEGLVHISELRKEGRIANVADVVTKGQKVKVKVLSFTGTKASLSMKDVNQET
GEDLNPNRRRNLDTGLGDEALRNPDRPVEASMLDMEENPTERKRLAKITDLEKWEIKQMI
AANVLPKEEFPEFDEETGILPKMDDDEDQELEIDLVEEEPPFLRGQTKWSTNLSPVKIVK
NPDGSLSQAAMMQSALAKERRELKQVARAAELDSIPTGLHKNWIDPMPDYEGRQIAANMR
GIGAMPADLPEWKRYAFGGNQVSYGQKTELSILQQRECLPIFKLKEELVQAVHDNQILIV
VGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEYGCRLGQEVGYTI
RFEDCTSTETVIKYMTHGMLQRECLLDPDMSLYSLIMLDEAHERTIHTDVLFGLLKKTIQ
KRKDMKLIVSSATLDAVKFSQYFYEAPIFTIPGRTYPVEVLYCKEPETDYLDASLITVMQ
IHLTEPPGDVLVFLTGQEEIDTACEILYERMKSLGPNVPELIILPVYSALPSEMQTRIFD
PAPPGSRKVIIATNIAETSLTIHGVYYVVDPGFVKQIVYNSKTGIDQLVVTPISQAQAKQ
RAGRAGRTGPGKCYRLYTERAYRDEMLTTNVPEIQRTSLASTVLSLKAMGINDLMAFDFM
DAPPMETLIIAMEQLYTLGSLDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEML
TIVSMLSVQNIFYRPKDKQAQADQKKTKFFQLEGDHLTLLAVYNSWKNNKFSNPWCFENF
IQARSLKRAQDIRKQMLSIMDRHKLDVVSCGKATMRVQKAICSGYFRNSARKHPHDGYRT
LIDQQVVYLHPSSTLFNRQPEWLVYHELVLTTKEYMREVTTIDPRWLVEFAPAFYRVGDP
TRLSRQKKQQKLEPLYNRYEEPNAWRISRAFRRR
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggctgcttcagacgaaataaaacgtctggaatatttatctttggtgtcaaaggtgtgc
acggagttggagaatcatctgggaatatgcgagaaagatctagctgaattcatcatcagt
ctcgccgaaaaacacacaacatttgaggaattcaaagcagttctgtgtgaaaatggagca
gacttcacagatacgtttgttggtaatttacttagacttattcatactatgcggtccgca
ccatctacaagtaaagatcaccagccgccgagtgagaaggacaagctgaaagagaaatat
cctgctttatgtaaaccagatgatcctgtgtggatgattccaccacgtcacacagatgaa
ggtgatgagcagattgcagcagcagccatgaaggagctggagatgctcatgcctaacttc
tgtggaacaagctctgataatgggtcagacaggagtcgagacacagagggacaaatcaga
cgtcagcgaagtcgttctcctgacggagaaacaaaaccaaagtgtaaaaggaaacgagtg
tctcgctggagtgaccatcctccgagcccccgcagagacgatgacaacaacaagaaggat
gacagagactctgaccgctggcgcgatacacctgtggatcggcctccgccagaggagcct
gttgtgggcgacgtctacaatggcaaaatcagcagtattatgcagtttggctgttttgtg
cagctagagggcctcaggaaacgctgggagggtctggtgcacatctcagagctgcgtaaa
gaaggacgtatagccaatgtggctgacgtggtcaccaaaggccaaaaggtgaaggtcaaa
gtgctgtccttcacgggaaccaaagccagcctcagcatgaaggatgtcaaccaggagacg
ggggaggacctgaaccccaaccggagaagaaacctggacactggactcggagacgaagcc
ttgaggaaccccgaccgccccgttgaagccagcatgctggacatggaggaaaacccaacg
gagcgcaaacggctcgccaagataacggacctggaaaaatgggaaattaaacagatgatt
gccgcaaacgtacttcctaaagaagagttcccagaatttgacgaggagacgggaatcctt
cccaagatggatgacgatgaagatcaagaattggagatcgatctggttgaggaggaacca
ccgttcctgaggggacagactaaatggagcacaaacttgagccccgtcaaaatagtgaag
aatccagacggctccctctcccaggcagccatgatgcagagcgctctagcgaaggagagg
agagagctgaagcaggtggcccgcgcagcagagttggactccatccctaccggtctccac
aagaactggatcgacccaatgcctgactatgaaggaaggcagattgctgccaacatgaga
ggcatcggcgctatgcctgccgatcttccagagtggaaaagatatgccttcggggggaac
caggtttcgtatggccagaagacagaactttccatcctgcagcagagagagtgtcttcct
attttcaagctaaaggaagagcttgttcaggctgttcatgacaatcagatcttgattgta
gttggagaaactggctccggtaagacgacgcagatcactcagtacctggcggaggcaggc
tacacctcgcgggggaagattggctgtacgcagcctcgtcgtgttgccgccatgtcggtg
gccaagagagtctctgaggagtacggttgccgtctaggccaagaggtgggttacaccatt
cgatttgaggactgcaccagtactgagacggtaatcaagtacatgacccacggtatgctg
caaagggaatgtctgctggacccagacatgagtctgtattccctcattatgctagatgag
gcccatgagagaacaatccacaccgacgtgctctttggccttctcaagaagacgatacag
aaacgcaaagacatgaagctgatcgtctcctctgctacactggatgctgtcaagttctct
cagtatttctatgaagctcccatcttcaccatcccaggaagaacttacccagtggaggtt
ctctactgcaaagagcctgagactgactacctggacgccagtctcatcaccgtcatgcag
atccatctaactgagcccccaggtgacgtcctggtgtttctgacgggacaggaagagatc
gacacagcttgtgagatcctgtacgagagaatgaagtctctggggccgaatgttcctgaa
ctgattattctgccagtttattctgccctgcccagtgaaatgcagaccaggatctttgac
ccggcacccccaggcagcagaaaggtcatcattgccactaacattgctgagacgtctctc
actattcatggagtctactacgtggtggaccccggctttgttaagcagatcgtgtataac
tccaagacgggcatcgaccagctggtggtgactcccatatcacaggcccaagccaagcag
agggcgggtcgagccggcaggacgggcccagggaagtgttacaggctctacactgagaga
gcctacagggacgagatgctgaccaccaacgtgcccgagatccagagaaccagcctggcc
agcactgtgctgtctctgaaggccatgggcatcaacgacctcatggcttttgacttcatg
gacgctcctcccatggagactctgatcatagccatggagcagctctacactctgggctct
ctggatgatgaaggtttactcacacggctgggacgaaggatggcggagtttcctctggag
cccatgctgtgtaagatgttgatcatgtccgtccatctgggctgcagtgaagagatgctc
accatcgtgtccatgctgtctgtgcagaacatcttctacagacctaaggacaaacaggcc
caggctgaccagaaaaagacaaagttcttccagctcgagggagatcacctgaccctgctg
gctgtctacaactcctggaagaacaacaagttctccaacccctggtgtttcgagaacttc
atccaagcccgctccctaaagagagctcaggacatccgcaagcagatgctgagcatcatg
gacagacacaagttggacgtggtatcttgtggaaaagctacaatgcgggtccagaaagca
atctgcagcgggtacttcaggaactctgccaggaagcacccccatgatgggtaccgtacc
ctaattgaccagcaggtggtgtacctccacccctccagcactctgttcaaccgccagcca
gaatggcttgtgtaccatgagttggtgctgaccactaaggagtacatgcgggaggtgacc
accatcgaccctcgctggctggtggagtttgcgccggcattctacagagttggggacccc
acgcgcctcagccggcagaagaagcagcagaaactggaacctctctacaaccgctacgag
gaacccaacgcgtggaggatctcccgcgccttcagacgacgctga
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integrated database retrieval system
