Cottoperca gobio: 115025368
Help
Entry
115025368 CDS
T07513
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3 isoform X1
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115025368 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115025368 (pan3)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
115025368 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
115025368 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_CK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Torus
zf-CCCH_DUS3L
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
115025368
NCBI-ProteinID:
XP_029313406
Ensembl:
ENSCGOG00000012814
UniProt:
A0A6J2RSY8
LinkDB
All DBs
Position
20:complement(2190358..2203714)
Genome browser
AA seq
853 aa
AA seq
DB search
MDSDNNDDQDFMHAKSISSAKKHLSIIISGGGSSGAMNSGLPASAAPLGVAGIPNVKVKF
CRYYAKDKTCFYGEECQFLHDEPSMGSLPLHGGGSPVPLSMAGGGGTPAGYSLGGPAAAC
PGGGGTGVSKKSETLGPAGTSLEGQLLTIPGMEGASLSDANLTNSYFSSSFIGVNGFGSP
AESKYSMMQRMTTSSSSPSLLNDGAKNFSHSTHDPVNSPTSSLFSDFGSLSISQRRKAPN
PAASEFIPKGAPRMAAMAQSTMAQSTMAQSTMAQSTMAQTTMAQSTVQAFPSPIFPHPGL
SSSTAAALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTAADQATHII
QKETVGGTTYFYTDNTPAPMAGMVFPTYHIYPPTAPNVAYMQPKANAPSFFMADELRQEL
INRHLITMAQIDHSENPDVPSEVDSYHSLFPLEALPPPNRMQKTSNFSYITSCYKAVNSK
DDLPYCLRRIHGFRLVNTKCMMLVDMWKKIQHSNSVTLREVFTTKAFGDHSLVFSYDFHA
GAETMFSRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHT
AGLACRVMDPSKIVITGKTRLRVNCVGVFDVLTFDSSQTNHLALMPQYQQADLVSLGKVV
LALACNSLAGIQRENLQKAMELVSINYSSDLKNLILYLLTEQSRLRSVNDIMPMIGARFY
TQLDASQMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPTWSETGDRYLLKLF
RDHLFHQVTEAGTPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDS
TFQELQAAASGSL
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atggatagcgacaacaacgacgaccaggatttcatgcatgcaaagagcatttcttctgcc
aaaaagcatcttagcattataatcagcggtggcggcagcagcggtgccatgaacagtgga
ctcccagcttcagctgctccgctcggggttgccgggataccaaatgtcaaggtgaagttt
tgccgatattacgcgaaagacaaaacctgcttttatggagaagagtgtcagttcctgcat
gatgaaccgtccatgggaagcctgccgctgcacggtggcggtagccccgtcccgttgtcc
atggccgggggtggcgggacgccagcggggtattcccttggcggacccgcggccgcctgc
ccgggtggcggggggaccggtgtgtccaagaaaagcgaaacattggggcctgcaggcacg
tctctggaggggcagctgttaaccatcccagggatggagggtgcgtcactgagcgatgcc
aatctcaccaattcttacttcagcagcagctttattggggtcaatgggtttggaagccca
gcagagtctaaatactcaatgatgcagcgaatgactaccagcagcagctctcccagtctc
cttaacgacggtgccaagaacttcagccacagcactcatgatccagtgaactccccgaca
tcctcactatttagtgattttggttctcttagcatttcccaaaggagaaaggctcctaac
ccagcagcaagtgagttcatccctaagggagctccacgcatggcagccatggctcagtcc
accatggctcagtccactatggctcagtccactatggctcagtccactatggctcaaacc
accatggctcagtccacagtccaggccttcccttcaccaatcttcccacatcctggtctc
agcagctccacagctgctgcgctggctcctggcatgtctctgtctgcgggatcttctcct
cttcactccccaaaaattacaccgcacacctcacctgctcctcgccggcgcagtcacacc
ccaaaccctgccaactacatggtgcccaccactgcagctgaccaggctactcacataatc
cagaaagagactgtaggggggacgacctacttctacacagacaacaccccggcaccaatg
gctgggatggtgtttcctacctaccatatctatccccccactgctcccaatgtggcttac
atgcagccgaaagccaatgccccatctttcttcatggctgatgaactccgacaggagttg
ataaacagacatctgataaccatggcccagattgatcactcagagaacccagatgtaccg
tctgaggtggacagctaccacagcctctttcccctcgaggccctccccccaccaaaccgc
atgcagaagaccagcaacttcagctacatcacctcctgctacaaggcagtcaacagcaaa
gatgacctgccttactgcctgaggaggatacacggtttccgccttgttaacaccaagtgc
atgatgctggtggacatgtggaagaagattcagcactcaaactcagtaacactgagggag
gtcttcaccacaaaggcctttggagaccattcgttggtgttctcctatgacttccatgcg
ggtgcagaaaccatgttcagcagacacttcaatgatccagcagcagactcgtacttcacc
aagaggaagtggggacaacacgagcctcctccgccacggcagcatgcaggtctgctcccc
gagtctctgatctgggcttacatcgtccagctcagctcggccctgcgcaccatccacacc
gccggcctggcctgccgcgtcatggaccccagcaagattgttattactggcaagaccagg
ttacgggtgaactgtgttggtgtgtttgatgtcttaacttttgacagcagtcagaccaat
catcttgccctaatgccacagtaccagcaagcagacctagtgtcactgggcaaggtggtg
ctggcgctggcatgtaactccttggctggcattcaaagggagaacctgcagaaggccatg
gagctggtgtctatcaactactcgtcagacctcaagaacctcattctgtatctgcttact
gaacagtctcgcctgcgcagtgtcaacgacattatgccgatgattggagctcgcttctac
acacaactggatgcatcgcagatgaggaatgatgtcattgaggaagacctggctaaggag
gtgcaaaacggccgtctcttccgcctgttggctaaactgggcacgatcaacgagcgtcca
gagtttcagaaggacccgacgtggtcggagacgggcgaccgctacctgttgaagcttttc
cgggatcacctgttccaccaggtgacagaagctgggacgccctggatcgacctcagccac
atcgtctcctgcctcaacaaactggacgcgggcgttcctgagaagatcagcctggtgtct
cgggatgagaaaagcgtcctggttgtgacctactcggacctgaagcgctgtttcgacagt
accttccaggagctgcaggctgcagcctccggctctctgtag
DBGET
integrated database retrieval system
