Cottoperca gobio: 115025440
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Entry
115025440 CDS
T07513
Name
(RefSeq) transcription factor Sox-17-alpha-like
KO
K04495
transcription factor SOX17 (SOX group F)
Organism
cgob
Cottoperca gobio
Pathway
cgob04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
115025440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cgob03000
]
115025440
Transcription factors [BR:
cgob03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
115025440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
Sox17_18_mid
HMG_box_2
HMG_WDHD1
HTH_24
Motif
Other DBs
NCBI-GeneID:
115025440
NCBI-ProteinID:
XP_029313555
Ensembl:
ENSCGOG00000017946
UniProt:
A0A6J2RW54
LinkDB
All DBs
Position
20:4721267..4723231
Genome browser
AA seq
400 aa
AA seq
DB search
MSSPDAGYASDDQTQARCTMSVMMPGMGHCQWADPLSPLGDTKVKNEPCASSSGSQNRGK
TEPRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALPVTEKQPFVEEAER
LRVQHMQDHPNYKYRPRRRKQVKRIKRLDSGFLVHGVSDHQGPSMSGDGRLCVESLGLGY
HEHGFQLPPQQLSHYRDAQALGGPSYESYSLPTPDTSPLDAVESDLMFFPSHSQEDCHMM
PAYTYHSQAAEYQPQDPHSNHHSNPIQHRHPASASEQPPQPATLPPSYMGCPNPLAMYYT
QHCSPSQPKRHPGGAGQLSPPPDAHPHSADSVEQMHHSELLAEVDRSEFEQYLSSSSARV
DMPGLPYGTHEAGMQGPESLISTVLSDASTAVYYCSYNNS
NT seq
1203 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtcccgatgcgggttacgccagcgacgatcagacccaggcaaggtgtacgatg
tcagtcatgatgcctggaatgggacactgtcagtgggccgaccctctcagtcctctcggg
gacaccaaagtgaagaacgagccgtgcgcctccagctccggcagccagaatcgcggcaag
accgaaccgcggatccgacgacccatgaacgcgtttatggtctgggcgaaggatgagcgc
aagagactggcgcagcaaaacccggacctgcacaacgcggagctgagcaaaatgctgggg
aaatcatggaaagcccttcctgtcacagagaagcaaccctttgtggaggaggccgagcgg
ctgcgggttcagcacatgcaggatcaccccaactacaagtatcggccccggcggcggaaa
caggtgaagaggattaagaggctggactctggctttcttgtccacggggtgtccgatcac
cagggcccgtcgatgtccggggacggcagattgtgtgtggagagtctgggcttgggctac
cacgaacatggcttccagcttcccccacagcagctcagccactaccgagatgctcaggct
cttgggggcccctcttatgaatcctacagcctccctacacctgacacctctcctctggac
gctgtagagtcagacctcatgttcttcccttcacattcacaagaggactgccacatgatg
cctgcgtatacttaccactcccaggcggcagagtatcagccccaggaccctcactccaac
caccacagcaaccccatccagcaccgacaccctgcctcagcttcagagcagccccctcag
cctgccacccttcccccttcctacatgggatgccctaaccctctggccatgtattacacc
cagcactgcagtcccagccagcccaaacggcaccccggtggagcagggcagctctccccc
cctcctgacgcccaccctcactcagcagacagcgtggagcagatgcaccactctgagctg
ctggccgaggtggaccgcagcgagttcgagcagtatttgagctcctcttcggcgcgcgtg
gacatgccaggcttgccgtacgggacacacgaggctggcatgcaaggacctgaaagcctc
atatcaacggtgctgtcagacgccagcacagctgtgtattactgtagctacaacaactcc
taa
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