Cottoperca gobio: 115026236
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Entry
115026236 CDS
T07513
Symbol
col4a1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
cgob
Cottoperca gobio
Pathway
cgob04382
Cornified envelope formation
cgob04510
Focal adhesion
cgob04512
ECM-receptor interaction
cgob04518
Integrin signaling
cgob04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
115026236 (col4a1)
04518 Integrin signaling
115026236 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
115026236 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
115026236 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
115026236 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115026236 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115026236 (col4a1)
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
115026236 (col4a1)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115026236 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
115026236
NCBI-ProteinID:
XP_029314819
UniProt:
A0A6J2RY82
LinkDB
All DBs
Position
21:15313398..15353113
Genome browser
AA seq
1638 aa
AA seq
DB search
MLLPSGTLLLLAALYSSVDLTWAEGCGASCGKCDCSGVKGTKGERGFPGLQGNMGFPGMQ
GPEGPPGPMGPMGGLGDTGTPGLKGVRGPSGLPGFPGNPGLPGINGNDGPPGSHGIPGCN
GTKGDRGRDGTSGFSGLQGPPGIPGLHGMKGDPGGVIGIVPLKGDRGLPGTPGLPGSSGN
VGVTGPPGNRGFQGPKGDPGLAGPPGEKGDKLAFVSEKGAKGDQGYRGPPGPPGPPSLGV
EGVRPTVHLPGPQGERGLTGDKGDTGQCIPHAFGVKGEQGPPGPSGKSGKDGVEGLKGEK
GLQGSIGYIGSQGEKGESGPPGYGDGGSGRPGSPGFPGLQGQKGFAGPQGEAGPPGQHIE
GPRGESGQKGNIGEKGDRGIEGESLVGPPGQPGTPGLSGPPGQPIDRNECNIKKGAPGPP
GPPGLLGEFGQKGDTGDNCVKCEGFGPPGPLGPKGDRGPPGPVGGKGEKGGDGSSGQPGN
PGFQGIPGLMGAPGAVGEPGDIVGVDGLKGEKGLPGISGSPGQPGLDGPQGRDGLPGIPG
FKGESDKEGIKGDRGPVGDPGHIGPQGESGPPGLPGFGRPGEHGEKGSQGRPGIPGTPGP
SGAKGDPGKGVSTPGPQGGPGTHGETGIPGLQGDRGLPGDPGLPGFPGLKGEHGPSGIGF
PGLTGSKGNSGVPGASGLSGEPGRPGQDGLTGQSGTPGQKGEPGQGLPGPKGSQGLQGIT
GFQGDKGTIGLPGVPGREGQTGPPGHQGIKGGVGPPGPHGQIGLPGSPGKGSPGVPGPQG
PAGETGPYGGEGVKGERGYPGSPGLDMPGPQGEKGTSGFPGNQGSNGLPGQPGLPGRDGL
IGNQGFKGEMGVIGTPGVPGFPGPTGTAGSPGLRGDSGITGPRGIIGETGVKGERGDQGL
QGPAGNMSDVDMEHMKGEKGDHGNRGNTGSTGDKGHRGLPGNPGMPGKHGEPGLAGQPGE
KGDSGFAGDPGSMGPPGQKGTGGEMGIPGVVGPSGPRGNIGTPGHTGFRGTDGLKGDKGT
AGDPGIGLPGHSGEKGQIGLPGFPGSTGERGLKGHEGMSGTPGLQGTKGDKGTIGYSGQP
GRPGDKGTTGLLGSEGESGQDGRPGEGGLQGPPGVSGEKGDPGVDGIPGSSGERGDPGIP
GRGFSGTPGVLGSKGDIGIPGFPGTPGHPGVPGIKGDKGLLGSHGPQGVTGERGYTGMSI
EGPKGETGVTGQPGEAGSPGGPGPSGVPGRDGFKGDIGDQGLPGFQGESGHKGDPGVSGL
PGQTGLPGIDGQKGVRGLQGVPGFPGARGHFGDIGVKGEVGDNGFPGEKGIDGPPGPPGP
HTFTKGDIGFQGTQGLQGPQGPSGYLGQKGQQGVTGIRGPKGEDGIPGYHGQSGSKGDLG
LPGPQGPRGHPGPPGPDGVPGQVGHTGPSSMDHGFLVTRHSQTVEVPTCPEGTSLIYDGY
SLLYIQGNERSHGQDLGTAGSCLRKFSPMPFLFCNINNVCNFASRNDYSYWLTSPEPMPM
TMAPITGQGIKPFISRCSVCEAPAMVIAIHSQTIMIPACPHGWDSLWIGYSFVMHTSAGA
EGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDSEMFTKPVPTTLK
AGSLRTHISRCQVCMKRT
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaccgtccggcaccctcttactgctggcggctctctactcaagtgtagacctg
acatgggctgagggctgcggggcatcatgtggaaaatgtgactgcagtggtgtgaaagga
acaaagggtgagcgtggatttcctggtcttcaaggtaatatgggatttccagggatgcag
ggacctgaaggtcctccaggaccaatgggccccatgggaggtcttggtgacactggaact
cctggactgaaaggagtgcggggtccttctggtctgccaggtttcccaggaaacccagga
ctaccaggcatcaatggaaacgacggcccacctggttcacacggtatcccaggatgcaat
gggaccaaaggagacagaggaagggatggcacttctggtttttccggtcttcaaggacct
cctggcatcccaggacttcatggaatgaagggtgaccctggtggtgtgatcgggattgtt
ccgctgaaaggagacagaggattacctggcacacctggattacctggatcaagtggaaat
gttggagttactggacctccaggaaatcgaggctttcaaggacccaaaggtgatcctggc
ctcgctggccctcctggagagaagggtgacaagctggcctttgtgagtgagaaaggagct
aagggtgatcaaggatatcgtggcccacccggccctcctggacctccatcactcggagtg
gaaggagtacgtcccacagtgcatttacctggaccacagggtgaaagaggacttacagga
gacaaaggagacacaggtcaatgcatccctcatgcatttggtgtcaaaggtgaacaaggc
ccgcctggaccaagtggtaaatctggcaaggatggagtagaagggctgaagggagaaaaa
ggccttcaaggatctattggatacattggttcccagggtgaaaagggagaaagtggacca
ccaggttacggtgatggcggctctggtcgtcctggttctcctggtttcccagggttacaa
ggacaaaagggttttgctggtcctcagggagaggcaggtccaccaggccagcacattgaa
gggcctcgtggagagagtggtcagaagggaaacattggtgagaaaggagacaggggcatt
gaaggagagtctctcgttggtcctccaggacaaccaggaacccctggactctctggacca
cctggacaaccgattgaccgtaatgaatgtaacataaagaaaggagctcctggcccacct
ggacctccagggttattaggagaatttggacagaaaggtgacacaggggataactgtgtt
aaatgtgaaggtttcggcccacctggcccccttggccctaaaggagatcgaggacctccg
gggccagtaggaggcaagggagaaaagggtggggatggctcttctggacaacctgggaat
cctggttttcaaggtattcctgggttaatgggagcccctggtgctgttggcgagcctggg
gacattgtcggagttgatggtttgaaaggggagaaaggtctgcctggcatttctggttcg
ccggggcagccagggctggatggaccgcaagggagagatggcctcccgggtatacctggc
tttaaaggggaatcggacaaagagggcatcaagggtgaccgtggaccagttggagaccct
ggtcatattgggcctcagggagagagtggtccacctggcctgccaggctttggtcgacca
ggagaacacggagagaagggcagtcaagggagaccaggcattcctggaactccaggacca
tctggtgctaaaggtgatccaggtaaaggtgtgagcactcctggacctcagggaggacct
ggaacacatggagaaaccggcatacctggacttcaaggtgacagaggccttccgggagac
ccagggttgccaggtttccctggactgaagggtgaacatggaccctctggaattggattt
ccaggcctaactggttctaaaggaaacagtggcgttccaggagcttcaggattatcagga
gagccaggaagaccaggacaggatggcttgactggacaatctggtacacctggacaaaaa
ggtgaaccagggcagggtcttccaggcccaaaaggttcgcaaggcctccaaggaattact
ggcttccagggagacaagggtaccattggactacctggtgttcctggacgagaaggccag
acaggaccaccgggacatcagggaatcaaaggtggggtgggacccccaggacctcatgga
cagattggcttaccaggttctccagggaaaggttcgcccggagtccccggaccacaagga
ccagctggagagactggaccatatggtggggaaggtgtaaagggagaaaggggctaccca
ggctctcctggtctggacatgccggggcctcagggagaaaagggaacatccgggttccca
ggaaaccaaggttctaatggactgccagggcaaccaggtctacccggcagggacggatta
atcggaaaccaaggttttaaaggtgaaatgggggtcataggaacaccgggagtaccagga
tttcctggaccaactggtacagctggatctcctggactgagaggtgattctggtataact
ggaccaagaggtattattggagaaactggagttaaaggagaaaggggagatcaaggtctt
cagggacctgctggcaacatgagtgatgttgacatggagcacatgaagggggagaaggga
gaccacggaaacagaggtaacactgggtccactggagataaaggccaccgtggacttcct
ggtaaccctggaatgccaggcaaacatggagagcctggattagctggacaaccaggtgag
aaaggagactctggttttgccggagatcctggcagtatgggaccacctggacagaaaggc
actggaggagagatgggaataccaggtgtggttggtccatcgggtcctagaggaaatatt
ggtacaccgggacacaccggattcagaggcacagatggactgaaaggagacaagggaaca
gctggcgatccaggtattgggctaccaggacattcaggagaaaaggggcagataggcctg
ccaggattcccaggatcaacaggagagaggggtctgaagggtcatgagggtatgtccggc
acaccaggactgcaaggaacaaagggagacaaaggaaccatcgggtattcaggtcagcca
gggagaccaggcgataagggtaccactgggctgctggggtctgaaggagaatctggtcag
gacggtcgccctggtgaaggtggcttgcagggacctcctggtgtttctggagagaaggga
gatcctggagtggatggtatccctggatcctcaggggagagaggagacccaggtataccc
ggtcgaggtttctccggaacacctggagtgcttggtagcaaaggtgacataggtattcct
ggcttccctggcactccaggtcatccaggtgtccctggtatcaaaggtgacaagggactt
ttaggctcacatggaccccagggtgtgacaggagagagggggtacacgggtatgtccatt
gagggccccaagggagagacgggagtgacgggacaacccggtgaagcaggatccccagga
ggaccaggaccctctggtgtgccaggcagagatggctttaagggagacataggagatcag
ggtctccctggtttccagggagagtcaggacataagggtgaccctggagtttctggactt
cctggacaaactggccttcccggtatcgatggacagaagggagtgaggggattgcagggt
gtccccggcttcccaggtgcaaggggtcattttggggacattggagtcaaaggagaagtt
ggagacaatggatttccaggagaaaagggcattgatggcccccctggtccccccggcccc
cacaccttcaccaaaggagacatcgggtttcaaggtactcaaggattacagggaccccag
gggccatctgggtaccttggacaaaaaggacagcaaggtgtgacaggtattcgagggcca
aagggtgaagacggtattcctggatatcacggtcagtccggatccaaaggagatcttggc
cttccaggcccacagggacccagaggacaccctggccccccaggacccgacggtgttcca
ggtcaagtgggtcacactggcccctcctccatggatcacgggttcctggtaacccgtcac
agccaaacggtggaggttccaacttgtcctgagggaacctcgctcatatatgatggctac
tccttgctctacatacaaggcaacgagcgttcccatggacaggacttaggtacggcaggc
agctgtctaaggaagtttagccccatgccgttcctgttctgtaacatcaacaacgtgtgc
aactttgcctcccgtaacgactactcctactggctcacctcccctgagcccatgcccatg
actatggcacccatcactggccaaggcatcaaacccttcatcagcaggtgttctgtgtgt
gaagctccagccatggtcatagcaattcacagtcagaccatcatgatcccagcatgccct
cacggctgggactctctatggattggttactcctttgtcatgcacaccagtgctggtgct
gagggctccggccaggctctggcctctcctggttcctgcctggaggaattccgcagtgct
cccttcatcgagtgtcacggtcgtggaacctgcaactactacgccaactcctacagcttt
tggctcgctaccattgaagacagtgagatgtttacgaaacctgtccccacaacgctaaaa
gcaggcagtcttcgaacacacataagccgctgtcaggtgtgcatgaagaggacataa
DBGET
integrated database retrieval system
