Cottoperca gobio: 115026730
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Entry
115026730 CDS
T07513
Symbol
col18a1
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cgob04147
]
115026730 (col18a1)
00535 Proteoglycans [BR:
cgob00535
]
115026730 (col18a1)
00536 Glycosaminoglycan binding proteins [BR:
cgob00536
]
115026730 (col18a1)
Exosome [BR:
cgob04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115026730 (col18a1)
Proteoglycans [BR:
cgob00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115026730 (col18a1)
Glycosaminoglycan binding proteins [BR:
cgob00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115026730 (col18a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF1554
DAG1
Motif
Other DBs
NCBI-GeneID:
115026730
NCBI-ProteinID:
XP_029315522
UniProt:
A0A6J2S1A3
LinkDB
All DBs
Position
21:complement(6244975..6319289)
Genome browser
AA seq
1454 aa
AA seq
DB search
MLKMRTQFGVLFLLTLWVVYSDAWFWGWTGTTTLPPTVDHEGSGSSAGSGEPPSESIARV
GAEIIDEGHGIQNVMQTWDETTEGPRLTTLIPTTQPENGRASEKGTAGISSRTRKPEESG
VSLQQLIGDPPPNTITQVYGPDNSPGYVFGPDANTGQLALAHLPSPFYRDFALIFNLKPT
SERGGIIFSVTDAAQQIMYVAVKLSAVKGSNQNVILYYTEPGSQQSYEAARFLVPSMKDT
WTRFAIAVRDEKVMFYFNCDTDPQVMRIERSQDEMELEAGAGVFVGQAGGADLEKFLGVI
SELRVVGDPRAAERHCEEDEDDSDMASGEGSGDEESRRPKPTVEKHRWTTTPPSSRPIQQ
PPLTRKDELSMARETASDSHHVSVSAESRPGLPVSPGPAGAKGEKGGRGDGGVKGDRGPI
GPKGEASSGSSSRGGARGEKGEPGEKGTKGSAGFGYQGKKGEPGLSGPSGPPGPPGPATE
FSVGGDGSVASGVPGPRGPAGQAGAAGPQGPSGTDGEPGDPGEDGKTGPDGPPGFPGTPG
DSGSKGDKGDRGEGQPGPRGSPGLPGPPGQGIRSTFVDMEGSGFPDLESVRGMPGLPGPP
GPPGLPGPSTAGTASSSGAFGPPGKDGVPGQPGLSGLPGTDGFPGVSGPQGERGDSGELG
LPGAVGQKGSQGDPGLLGISGETGLAGLPGPIGPVGQPGPPGPPGPSYRVGFDDMESSSG
GFSNGLPGVRGPEGRQGSPGLPGLLGKAGMPGMPGQKGSEGLIGRDGQPGLDGFPGPQGP
KGDGGDKGERGDQGRDGTGLQGPPGPPGPPGQIIYQTSGNADGVVGSVGSQGGAGLPGQA
GFPGPIGPKGDRGDSGLPGYGVKGEKGEPGLVIGPDGNLLHLEQQNGLKGDRGSPGPVGP
TGQYGPAGIKGELGMPGRPGRPGVNGYKGEKGDAVVGSGYGYPGVPGQPGPPGPPGPAFP
LDRFNRYDETSRNYPATKGEKGADGDRGLPGIPGTASNFDIYTFKNELKGERGDLGVKGE
KGESGGGYYDPRFGGVQGQTGPPGKPGLEGPKGESVLGPPGPQGPPGTPGIGYDGRPGAP
GPPGPPGPQGSPSLPAAYRPNNPVSVPGPPGPPGPPGSAAISSGVTILRSYDTMVATARR
QSEGSLIYIIDKADLYLRVRDGLRQVMLGEYSPFYRDLENEVAEVQPPPVIVYPQSHNNG
AGHYSQGGSAIRPIEPPPHPPVDPRYPPRYDPRFPEPRHTGQTDGRLATQQTDNRYAVTP
QRRPSPPVPQPAVHVEPSASGLHLIALNAPQTGNMRGIRGADFLCFQQARAIGLKGTFRA
FLSSKLQDLYTIVRRSDRDSFSILNLKDQVLFNSWESLFSDNMNKMRENVPIYSFDGRDI
LRDSAWPEKMVWHGSSNKGHRQTDHYCETWRAGDHAVTGLASSLQSGHLLQQSSSSCSGS
YIVLCIENAFTSHS
NT seq
4365 nt
NT seq
+upstream
nt +downstream
nt
atgcttaagatgaggacccagtttggagttttgtttttgttgaccctgtgggtggtctac
tctgatgcttggttctggggctggactggtactacaactttgcccccaacagtggaccat
gaggggtctggcagttcagcaggtagtggagaaccaccatcagagagtatcgcaagggtt
ggagcggagatcattgatgaaggacatgggatccaaaatgttatgcagacgtgggatgag
accactgagggacctcgactgaccactctaatacctacaacacaaccggagaatggtcgt
gcatcagaaaagggaacagcagggatttcgtcacgcacacgtaaacctgaagaaagtgga
gtctccctgcaacagctgattggggatcctcccccaaacacaatcacccaggtctacggg
cccgacaacagccctggctatgtgtttggccctgatgccaacacagggcagctggccctc
gcccacctgccgagcccgttctaccgagactttgccctcatcttcaacctgaaacccacc
tctgaaaggggcggcatcatcttctccgttacagacgccgcacagcagatcatgtatgtg
gctgttaaactgtccgccgtgaagggcagcaaccagaatgtcatcctgtactacactgag
cccggctcccagcagtcgtatgaggcggccaggttccttgtgccctccatgaaggatacc
tggactcgttttgccatcgctgtgagggatgagaaggtgatgttctacttcaactgtgac
acagaccctcaggtgatgcgcatcgagaggtcgcaggacgagatggagctggaagccggt
gctggggtctttgtcgggcaagctggaggagctgatcttgagaagtttctaggggtaatc
agtgagctgagggtggtgggagacccccgtgctgctgagaggcactgtgaggaggatgaa
gacgactctgatatggcttcaggtgaaggaagcggcgatgaggaaagcagacgtccaaaa
ccaaccgtggagaagcatagatggacgactactcctccatcttcccggcccattcagcag
ccaccactgaccaggaaggacgagctgtctatggcaagagaaacagcaagtgactcacat
cacgtttcagtttctgcggagtccaggcccgggcttcctgtgtcaccagggccagctggg
gctaaaggagaaaagggcggccgaggggatggaggagtgaaaggagacaggggcccaatt
gggccgaaaggagaggccagttctggctccagctcacgaggcggagcccgtggagagaag
ggagaaccaggggaaaagggaacaaagggcagtgcaggctttggctaccaaggaaagaag
ggagagccgggactctctgggccctctggtccccctggccctccagggcctgcaaccgag
ttttcagtcggcggtgacggctcagtggcttccggtgtccccggaccccgaggaccagct
ggacaagcaggtgccgcgggcccccagggaccatccggaactgatggagagccaggtgat
cctggggaggatggaaaaaccggccctgatggacctcctggcttcccaggaactcctggt
gactctggatctaaaggagataagggagatcgtggagagggtcaacctggccccagggga
tcaccaggacttcctggacccccaggtcaaggtatcagatctacttttgtggacatggaa
ggctcagggttccctgatctggaatctgttcggggaatgcctggcctaccgggtccccct
ggtccccccggactccccggtccctctacagcaggcacagcatcgagttccggggcattt
ggaccaccaggaaaggacggagtgcctggtcaacctggcttgtctggtttgccgggtact
gatggcttcccaggagtttctggtccccaaggagaaaggggggattcaggcgagctgggt
cttccaggagcagttggacagaagggatctcaaggagaccctggtttactgggaatttca
ggagagaccggactggctggtctgcctggacccatcggaccagttggacaacctgggcct
cccgggcctccgggaccaagctatcgtgttggatttgatgacatggagagctctagtgga
ggtttcagcaatggactccctggtgtcagaggacctgaaggaagacagggttctcccggc
ttgcctggacttctgggtaaggcagggatgcctggtatgccaggtcagaagggcagtgaa
ggcctcataggaagagatggacaaccaggcttggatggcttccctggacctcagggacca
aagggtgacggtggcgataaaggagagaggggtgaccaaggtcgggatggaaccggactc
caaggtccccccggtccaccaggaccaccaggacaaatcatctaccagacatctggcaac
gcggatggtgttgttggcagtgttgggtctcagggaggagctggtttacctggtcaggct
ggattccctggtcctattggaccaaagggtgacaggggagactctggccttccaggctat
ggagtgaagggtgagaaaggtgaaccaggtttagtaattggaccagatggaaatcttctg
catctggaacagcagaacggtctgaagggagacagaggatcacctggaccggttggaccc
actggccagtatgggcctgctggaataaagggtgaacttggaatgcctggaagacctggt
cgccctggtgtaaatgggtacaagggagagaaaggagatgcagtagttggttctggctat
ggctacccaggagtccctggccaacccggaccacctggaccccccgggccagcctttccc
ttagaccgcttcaatcgctatgatgaaacttccaggaattatccagcgacgaaaggggaa
aaaggagcggatggtgatagaggacttccaggaatcccaggaacagcctctaattttgac
atttacacattcaagaatgaactgaagggagagcgtggcgacctcggtgtgaagggagaa
aagggagagtctggtggtggatattatgacccacgtttcggaggagtacaaggccaaaca
gggcctcccggcaaaccgggccttgagggtccaaagggagaatccgtattgggacctcct
ggaccccaggggccaccagggacaccagggattggttacgatgggcgtccaggtgctcca
ggaccacctggacctccaggaccccaaggatctccttcacttcccgcagcatataggccc
aataaccctgtcagtgttcctggacctcctggtcctcctggtcctcctggaagtgctgct
atctcctctggggttactattttgaggtcatatgacacaatggtagctactgccagacgc
cagtcagagggcagcctcatctacatcattgacaaagcagacctctatttgagagtacgc
gatggactgcggcaagtcatgcttggagagtacagtcccttctacagagatctggagaac
gaggtggcggaggtccagcctccacctgtgatcgtgtacccccagtcccacaacaacgga
gctggccattactctcagggtggttctgccatacgacccattgagcctcctccacatcca
cctgtagaccccagataccccccacgttatgatcccagattcccagaaccgagacacaca
ggtcagacagatggaaggttagccacccaacagactgacaacagatacgctgtaactcca
cagcgacggcccagtccacctgtaccgcagcctgctgtccatgtggagccgtcagcatca
ggactgcatctcatcgccttgaacgcccctcaaactggtaacatgcgaggaattcgcgga
gcagacttcctttgcttccagcaggcccgagctataggcctgaaggggaccttcagagct
ttcctgtcctccaagcttcaagacctgtacaccattgttcgcaggtcggacagagacagc
ttctctatcctcaacctcaaggaccaagtgttattcaacagttgggagtcactcttcagt
gacaatatgaacaaaatgagggagaatgtaccaatctactccttcgatgggagagacatc
ctcagggacagcgcatggccagagaaaatggtctggcatggatcaagcaacaaaggccac
cggcaaacagaccactactgtgaaacatggcgggcgggcgaccacgctgtgactggtctg
gcatcatccctacagagcggccacctcctgcagcaaagctccagtagctgctccggctcc
tacatcgtcctctgcattgagaacgccttcacatcacactcctaa
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integrated database retrieval system
