Cottoperca gobio: 115026837
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Entry
115026837 CDS
T07513
Symbol
upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cgob
Cottoperca gobio
Pathway
cgob03013
Nucleocytoplasmic transport
cgob03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
115026837 (upf3a)
03015 mRNA surveillance pathway
115026837 (upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115026837 (upf3a)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
115026837 (upf3a)
mRNA cycle factors
P-body specific factors
115026837 (upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
115026837
NCBI-ProteinID:
XP_029315681
Ensembl:
ENSCGOG00000012272
UniProt:
A0A6J2RZB2
LinkDB
All DBs
Position
21:complement(19294384..19300064)
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AA seq
481 aa
AA seq
DB search
MRSEKDQMTVGKEKSIVEIQFRDIPREQENIPGNLKQKEEKKEVFTKVVIRRLPPSLSKD
LLEEQLSPLPSYDYFEFFPADQSLYPHLFSRAYINFKNPEDILLFRDRFDGYVFIDNKGQ
EYPAVVEFAPFQKISKKKLKKKDAKTGSIEEDPEYKRFLENYSCDEEKSMANPETLLGEI
EAKTRELIAKRTTPLLEYIKNKKIEKQRIREEKREERRRRELEKKRQREEEKRKRREEER
RKRKDTEKQKKMSDKDIKIKLLKKSDRDDDVDSDRMKDKSDIGELDRCKWEKTGGQTKLK
DPKEKGQPESDKEQREQHGRRQREKDHRGKDEERKRQRHHYEFDKFMRRKDETKWGKGYC
QDRAKKEGHHHGYSYCPDNGDKLGKEDREDLGNRKERLRNKVSDKVLQFHPTEQKHANQD
RPAMQLYQPGARNRKRMSSAGKGYDCIPAGHSPEPGTEHCYEAVNLATGLEKVFEKSKDE
Q
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgaggtctgaaaaggaccaaatgaccgtgggcaaggagaaaagcatcgtggagatacaa
tttagagacatcccaagagagcaggaaaacattcctgggaacctcaagcagaaagaagag
aagaaagaggtttttactaaggtggtgattcgaaggcttccacctagcctgtcaaaggac
ctgctagaggaacagctcagtccacttccttcctatgactattttgagttctttccagct
gatcaaagtctctatccccacttgttctccagagcatatatcaatttcaaaaaccctgaa
gatatccttctgttcagggaccgatttgatggctacgtctttatcgacaacaaaggccaa
gagtatcctgcagtggtggagtttgcccccttccagaaaatctccaagaagaagctaaaa
aagaaagatgccaaaactgggagcattgaagaagacccagaatataagcggttcttggag
aactactcctgtgatgaggagaagtctatggccaaccctgagactctgctgggagagata
gaggccaagaccagagagctcatagccaaacggacaacaccgctgttggagtacatcaaa
aacaagaaaattgagaagcagagaataagagaggagaagagagaggagaggaggagaaga
gagcttgaaaagaaacggcaaagggaggaggagaagagaaagcgacgagaggaggagaga
cgcaagcgaaaagacacagaaaagcagaagaaaatgtctgataaagacatcaaaatcaag
ctcctgaagaagagtgacagggacgatgacgtggattcggaccgaatgaaggacaaaagc
gacattggcgagctggacagatgcaaatgggagaaaactggaggacaaacaaagttgaag
gaccccaaagaaaaaggtcagcctgagagtgacaaggagcagagagagcagcacggccgc
agacagagagagaaggatcaccgtggaaaagacgaagagaggaaacgacagcgacaccac
tatgagtttgataaatttatgcgccgcaaagatgagaccaaatgggggaagggatactgc
caggaccgagccaagaaagaggggcatcatcatggctattcttactgtcctgacaatgga
gacaaactgggaaaggaggacagggaggacctgggtaacaggaaggaacgcctccgaaac
aaggtgagcgacaaggtgctgcagtttcaccccacagaacaaaaacatgcaaatcaggac
cgtcctgcgatgcagctctatcagccgggcgcacgcaacaggaagcgcatgagctcagca
ggcaaaggctatgactgcatccccgccggccactcacctgaacccggcacggagcattgc
tacgaggccgtcaacctggcgacagggctggagaaggttttcgagaaaagcaaagatgaa
cagtga
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integrated database retrieval system
