Cottoperca gobio: 115026980
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Entry
115026980 CDS
T07513
Symbol
parn
Name
(RefSeq) poly(A)-specific ribonuclease PARN isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
115026980 (parn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgob03019
]
115026980 (parn)
Enzymes [BR:
cgob01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
115026980 (parn)
Messenger RNA biogenesis [BR:
cgob03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
115026980 (parn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
RNA_bind
RRM_Thc1
R3H
Motif
Other DBs
NCBI-GeneID:
115026980
NCBI-ProteinID:
XP_029315830
Ensembl:
ENSCGOG00000003961
UniProt:
A0A6J2S2J2
LinkDB
All DBs
Position
1:complement(2178630..2188219)
Genome browser
AA seq
678 aa
AA seq
DB search
MEVTRQNYKDSLKTVYSAIEEADFLAIDGEFSGISDGPNVSALTNGLDTPEERYTKLKKH
SMDFLLFQFGLCTFTYDQTNSKYIIKPFNFYVFPKPFNRTSPDLKFICQSSSIDFLASQG
FDFNKVFCNGIPYLNQEEEAQLREQTEERRNQHANGIGTQSFISPSSKGPAHVPQEHKEY
INRVIGKVEALFTDSVKTLDLEPCTGFQRKLIYQTLNWKFPKGLHVETVETEKKERYIQV
SKVDDEERKRREQQKQEREQEELNDAVGFSRVIHAISKSGKLVVGHNMLLDVMHTIHQFY
CPLPEDLQDFKEVTMCVFPRLLDTKLMASTQPFKELITNTSLAELEKRVKEGPFKSPQVE
TAAGFHSYNTAQEQLHEAGYDAYITGLCFISMANYLGSFLTPPKPYISARSKLIDPFFNK
LFLMRIIDIPYLNLTGPDLQPKRDHVLYVTFPKEWKTSDLYQLFSAFGNIQVSWIDDMSA
FVSLSQTDQVQIAMNTSRYAESYRIQTYAEYIKGRLQDKDKVDHTPKSWGEDGWMKPSFT
PATSAGFGYPRGLRKRSISPVQGELGAGEPPITDGWSNYSYPDSTGSKKMKTDDKSGQAN
AEAIESKTSEGWLKTADASDSAGSSPIPDEDSPEGNDTEGTITWQQAPTVQGRKGQKNKK
KSKETESTTSLFEVPEVW
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgacacgccaaaattataaagacagtttaaagactgtgtacagcgcgatagag
gaggctgacttccttgccatcgatggagagttttcaggaataagcgatggtcctaatgtc
agtgcactcaccaacgggctggacacaccggaggagagatacacgaagcttaaaaagcac
tccatggactttctgctgttccagtttggattatgtacattcacgtacgaccagacaaat
tcaaagtatatcataaagccttttaatttttatgtattcccgaaaccgttcaacaggacg
tccccggacttaaaattcatctgtcaaagttccagtattgacttcctggccagtcaggga
tttgacttcaacaaggtgttctgtaatggaatcccatacctaaaccaagaagaggaagcc
cagctgagggagcagacggaggagaggagaaatcaacatgccaatggtatagggacgcag
tccttcatctccccgtcctccaaaggccccgcacacgtacctcaggaacacaaagaatac
atcaacagggtgatagggaaggttgaggctctcttcactgactccgtaaagactttggac
ttggagccatgcactgggtttcagagaaagctgatataccagacgctgaactggaagttt
cctaagggacttcatgtggaaactgtggaaacagaaaagaaggagcgatacatccaggtc
agcaaagtagacgatgaggagaggaagaggagggaacagcagaaacaggagagagagcag
gaggagctaaatgatgccgttggcttctccagggtcatccatgccatctctaaatctggt
aaactagtggttggccacaacatgctgttggatgtgatgcacaccatccaccagttctac
tgccctctgccagaggatcttcaagactttaaagaggtcacaatgtgtgtcttcccaaga
cttctggacacaaagttgatggcttccactcagccttttaaggagctgatcacgaacacg
tctctggcagagttggagaaacgggtgaaagagggccccttcaagtcgccacaagttgaa
actgcggcggggttccacagttataacacagcccaggaacagctccacgaggctgggtac
gacgcctacatcactggcctctgtttcatctcaatggccaactacctgggctcttttctg
actccccccaaaccgtacatctctgctcgctccaaacttattgatcctttcttcaacaag
cttttcctgatgaggataatcgatattccctacctcaacctcacgggaccagatttgcaa
cctaaaagggaccatgtcctgtatgtcaccttcccaaaagaatggaagactagtgacctc
taccagctctttagtgcctttggaaacatccaggtttcctggatagacgacatgtcagca
tttgtgtccctaagtcagacggaccaggtacagatagcgatgaacaccagccgctatgca
gagagttacaggatccagacttatgcagagtacatcaaggggaggctgcaggacaaggac
aaggtcgatcacacacccaaaagttggggagaggacggctggatgaagccttctttcacc
cccgctacgtctgctggttttggatatccgaggggtttgaggaaacgcagcatcagtccc
gttcagggagagctgggggccggagagcctccaattacagacggctggagtaactactcg
tacccggatagcacaggcagcaagaagatgaaaactgatgacaaaagtggacaggccaat
gcagaagcgatcgagagcaagacctcagaaggatggctaaagacggcagatgcatcagat
tcggcggggtcgagtcccatccctgatgaggacagtcctgaaggcaacgacacagagggg
acgatcacctggcaacaagccccgacagtccaagggaggaaaggtcaaaagaacaagaaa
aagtctaaagagactgaatctacaacgtcgctgtttgaagtcccagaagtctggtag
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