Cottoperca gobio: 115027121
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Entry
115027121 CDS
T07513
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03022
Basal transcription factors
cgob03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
115027121 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
115027121 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgob03021
]
115027121 (ercc3)
03400 DNA repair and recombination proteins [BR:
cgob03400
]
115027121 (ercc3)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
115027121 (ercc3)
Transcription machinery [BR:
cgob03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
115027121 (ercc3)
DNA repair and recombination proteins [BR:
cgob03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
115027121 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
115027121
NCBI-ProteinID:
XP_029316045
Ensembl:
ENSCGOG00000013547
UniProt:
A0A6J2S358
LinkDB
All DBs
Position
3:14502947..14510416
Genome browser
AA seq
780 aa
AA seq
DB search
MGKKDKGDRDKKSKKRFYEEEDDEEEAVGSESHDAIPAAAGKQVDESSIRLDEYGAKDYR
LQMLLKDDHAARPLWVAPDGHIFLEAFSPVYKYAQDFMVAIAEPVCRPNHIHEYKLTAYS
LYAAVSVGLQTSDIVEYMQKLSKTSVPDGIVQFIKLCTVSYGKVKLVLKHNRYFVESAFP
DVIQRLLQDHVIRECRLRTADGADTELITEIVHSKSAISKSIEEKGGTSSQQPGDGQTST
QQVPDDIFSYYEQMDKEEEEEEETQTVSFEIRQEMIEEVQKRCIQMEYPLLAEYDFRNDT
VNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRC
LVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRSW
EAERVMEWMRSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDLN
FLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILFYTMNPNKF
RACQFLIHFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPK
INTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFYS
LVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEDDLMFSSKDDQQQLLQKVLAASD
LDAEEEVVAGELGGRPQFSRRTGTMSSMSGADDTVYMEYQSRGKSAFGKNIHPLFKRFRK
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaggataaaggagatcgggacaagaagtccaaaaagcgtttctatgaagag
gaagacgatgaagaagaggcagtgggcagtgagtctcacgacgccatacctgctgctgca
gggaaacaagtggatgagtccagtataagactggatgaatacggagccaaggactaccgt
cttcaaatgctgctgaaggatgatcacgctgcacgtcccctctgggtggctccagatgga
cacatctttctggaagccttctcaccagtgtacaagtacgcccaggatttcatggttgcc
attgcagaaccagtctgcaggcctaatcatatccatgagtacaagctgacggcctattcc
ctgtatgcagctgtcagtgtagggctacagacctctgatattgtggagtacatgcagaaa
ctcagcaagacgtctgtacctgatggaatcgtgcagtttattaagctctgcacagtaagc
tatggcaaagtcaagctggtactcaagcacaataggtattttgttgagagtgccttccct
gatgtgatccagcgccttctgcaggaccatgtaatacgtgaatgtcgtctccgcactgca
gacggagcggacactgagcttattactgaaattgtccacagcaagtcagcgatttccaag
tctatcgaggaaaaggggggtacttcctcacagcagcccggcgatggacaaacttcaacc
caacaggtgcctgatgacatcttcagctactatgagcagatggataaagaagaagaggag
gaggaagagactcagactgtgtcttttgagatccgccaggagatgattgaagaggtgcag
aagcgttgtattcagatggagtaccccctgctagcagagtacgactttcgcaatgataca
gtcaaccctgacatcaacatagacctgaagcccactgctgtcttgcggccctaccaggaa
aagagtctgcgcaagatgtttgggaatggacgtgctcgctctggggtcatcgtgctgccc
tgtggagcgggcaaatctctggtgggcgtgacagcagcgtgcacggtgcgtaaacgctgc
ctggtgttggggaactcctcggtgtcagtggagcagtggaaagctcagttcaagatgtgg
tccactatcgatgactctcagatctgccgcttcacctccgacgccaaggacaagcccatc
ggctgctcagtggccatcagcacctactctatgctgggtcacaccaccaagcgctcctgg
gaggctgagagagtcatggagtggatgcggagtcaggagtggggactcattatcctggat
gaggtgcacactatccctgccaagatgttccgtcgtgttctgactattgtccaggcacat
tgcaaaatggggctcactgcaacactggtcagggaagatgacaagattgtggacctgaac
ttcctaattgggcctaaactatttgaggccaactggatggaattgcagaacaatggctac
attgccaaagtccagtgtgcagaggtgtggtgcccgatgtctccagagttttacagagag
tatgtggccatcaagacgaagaagcgcatcctgttttatacgatgaacccaaataagttc
cgcgcttgccagtttctcattcacttccacgagcggcgcaatgacaagattattgtcttt
gctgacaacgtgtttgccttgaaggagtacgccattcgcctcaacaagccgtacatctat
ggtccaacctctcagggggaacgaatgcagattttacagaacttcaaacacaatcccaag
atcaacaccattttcatctccaaggttggagacacatcatttgacttgccagaagccaat
gttctgatccagatctcctcccatggtggatcccgcagacaggaggcccagaggcttggc
agagtcttacgagccaagaaaggcatggtagcagaggagtacaatgcatacttctactca
ctggtgtcccaggacacccaggagatggcttactccaccaagaggcagaggttcttggta
gaccaaggttacagctttaaggtgatcacaaagttggcgggtatggaggaagatgaccta
atgttctcctcaaaagacgatcaacagcagctgcttcagaaggtcctagctgcttcagac
ctggatgccgaggaggaagtggtggcaggggagctgggcggacgaccacagttctcaagg
cgaacgggcaccatgagctccatgtcgggtgcagatgacaccgtctacatggaatatcag
agtcgaggcaaatctgcatttggcaagaacattcatccactgttcaagcgcttcagaaag
tag
DBGET
integrated database retrieval system
