Cottoperca gobio: 115027168
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Entry
115027168 CDS
T07513
Symbol
dhx38
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cgob
Cottoperca gobio
Pathway
cgob03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
115027168 (dhx38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115027168 (dhx38)
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
115027168 (dhx38)
Spliceosome [BR:
cgob03041
]
Complex C
Other components
Step II factors
115027168 (dhx38)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
AAA_16
Flavi_DEAD
NB-ARC
AAA_30
PhoH
AAA_7
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
115027168
NCBI-ProteinID:
XP_029316151
Ensembl:
ENSCGOG00000022123
UniProt:
A0A6J2S0N6
LinkDB
All DBs
Position
3:19909632..19924977
Genome browser
AA seq
1018 aa
AA seq
DB search
MTVVIPVHGIPSGSLRPLPQSNKEMDRSERSHRSGRESERRDRSIRGRYPDDTPLPTPSY
KYNEWANDRKHLGSTPRLSQGKGRKEDGAGGIMFDNVDEKDQWDEDQKQADRDWYMMDEG
YDEFHNPFTTTSEEYVKKREQILQKQTQKRISAHRRQINEDNERWETNRMLTSGVVQRLE
VDDDFEEDNAAKVHLLIHNLVPPFLDGRIVFTKQPEPVIPVKDATSDMAIIARKGSQLVR
KHREQKERKKAQHKHWELAGTKLGDIIGVKKTEESDTHGGKAVGEDGKVDYRAEQKFADH
MRDKSEASSDFAKKKTLLEQRQYLPIFAVRQQLLNIIRDNSIVIVVGETGSGKTTQLTQY
LHEDGYTSYGMVGCTQPRRVAAMSVAKRVSEEIGTNLGEEVGYAIRFEDCTSEKTLIKYM
TDGILLRESLRESDLDHYSAVIMDEAHERSLNTDVLFGLLREVVARRTDLKLIVTSATMD
SDKFAAFFGNVPIFHIPGRTFPVDVLFSKTPQEDYVEAAVKQALQIHLSGLIGDILIFMP
GQEDIEVTSDQITERLEDLDNAPALTVLPIYSQLPSDLQAKIFQKAPDGVRKCIVATNIA
ETSLTVDGIMFVVDAGYCKLKVFNPRIGMDALQVYPISQANANQRSGRAGRTGPGQCYRL
YTQSAYKNEMLTTTIPEIQRTNLANVVLLLKSLGVQDLLLFHFMDPPPEDNMLNSMYQLW
ILGALDNTGALTPTGRLMVEFPLDPALSKMLIVSCDMACSADILIIVSMLSVPAIFYRPK
GREEESDQVREKFAVPESDHLTYLNVYMQWKNNNYSSVWCNEHFIHTKAMRKVREVRSQL
KDIMVQQRMNLISCGSDWDIIRKCICAAYFHQAAKLKGIGEYVNVRTGMPCHLHPTSSLF
GMGYTPDYIIYHELVMTTKEYMQCVTSVDGEWLAELGPMFYSVKQAGKSRTENRRRAKEE
ITNMEEEMSMAEEQLQARREEQDKKSNTGTVKVVKICTPGRKDEAPMTPRRTPARFGL
NT seq
3057 nt
NT seq
+upstream
nt +downstream
nt
atgacagtggttattccagttcacggcattcccagtgggagtctccgtcccctgccccag
tctaacaaagagatggatcgctcggagcgaagccaccgctccggccgagagagtgagagg
agagacagatcaataagaggccgctaccctgacgacacacccctacctaccccatcatac
aagtacaatgagtgggccaatgacagaaaacatttgggttctacgcctcgtttatcacaa
ggaaaaggtaggaaagaagatggtgcgggaggaattatgtttgataatgtggatgagaaa
gaccagtgggatgaggaccagaagcaagcagacagagactggtacatgatggatgaaggc
tatgatgagttccacaaccctttcactaccacctctgaagaatatgtgaagaagagggag
cagattcttcagaagcagactcaaaaaagaatatctgcccataggcgacagatcaacgag
gataatgagcggtgggagaccaaccgtatgctgaccagtggtgtggtgcagaggttggag
gtggatgacgactttgaggaggacaatgctgctaaggttcatctactgattcacaacctt
gttcctccctttctggatggaagaatagtcttcactaagcagccggagcctgtcatccct
gtgaaagatgcaacctctgacatggccatcatcgctcgtaaaggcagccagctggtccgt
aaacatcgtgagcagaaagaacgcaagaaggcacagcacaaacattgggaattggcaggc
accaagttgggggatatcattggcgtcaagaagaccgaggagtcagacacccatggtgga
aaagcggtaggcgaggacggcaaagtagactacagagcagagcagaaatttgcagaccac
atgcgagacaagagtgaggccagcagtgactttgcgaagaagaagacccttctggaacag
aggcagtacctgcctatttttgctgtcagacagcaactccttaacatcataagggacaac
agcatcgtgattgttgttggggagacgggcagcgggaagaccacccagctgactcagtac
ctgcatgaggatggctacaccagctacggcatggtgggttgtactcagccccgaagagtg
gcagccatgagtgtggccaagagagtcagtgaggagattggcaccaaccttggagaggag
gtgggctacgcaatccgttttgaggactgcacatcggagaaaaccctgataaagtacatg
acagacggtatcctgctcagggagtcattgagggagtcggacctggaccactacagtgcc
gttatcatggacgaggctcacgagcgctccctgaatactgacgtgctgttcggcctgcta
cgtgaggttgtagctcgacgtactgatttaaaactcatagttacctctgcaactatggac
tcggacaagtttgctgcattttttggcaacgtacctattttccacattccaggaagaact
tttcccgtagacgtcttatttagcaagactcctcaggaggactatgtggaggcagcagtg
aagcaggccctgcagatccacctcagtgggctgataggagacatcctcatctttatgccc
gggcaggaggatatcgaggtgacgtcagatcagatcacggagcggctggaggacttggat
aatgctcctgctctgactgtgttgcccatctactcccagctgccttctgacctccaggcc
aagatcttccagaaggctccggacggtgtgaggaaatgcattgtcgctaccaacatcgct
gaaacctccctcactgtggatggaatcatgtttgtcgtagatgcaggatactgcaaactt
aaggttttcaatcctcgcattggaatggatgcgctacaggtttatcccatcagccaggcg
aatgccaaccagcgttctggccgagcaggacgtacaggaccagggcagtgttacaggctc
tacactcagagcgcctataagaatgagatgctgactaccaccataccagagatccagagg
accaacctggcaaatgtggtcctgctgttaaagtctctgggtgttcaggatttgctcctc
ttccacttcatggatccaccacctgaggacaacatgctcaactccatgtaccagctctgg
atcttgggagctctggacaacacaggtgctttgacaccgacggggcgtctgatggtggag
ttccccctcgaccccgccctctccaagatgctgattgtgtcctgcgacatggcctgcagt
gctgacatccttatcatagtctccatgctgtctgtgccggccatcttctacaggcctaag
ggtcgtgaggaggagagtgaccaggtgagggagaagttcgcagtcccagagagcgaccac
ctcacataccttaacgtctacatgcagtggaaaaacaacaactactccagcgtctggtgc
aatgagcacttcatccacaccaaggccatgcgcaaggtgcgtgaggtgcgctcccagtta
aaggacatcatggtgcagcagaggatgaacctgatttcctgcgggtcagactgggacatc
atcagaaagtgcatctgtgccgcatacttccaccaggctgccaagctcaagggcattggt
gaatatgtgaacgtgaggacaggcatgccgtgtcacctccatcctaccagctccctgttt
ggtatgggctacaccccggactacatcatctaccacgagctcgtcatgaccaccaaggag
tacatgcagtgtgtgacttcagtggatggagagtggctggcagaacttgggcccatgttt
tacagcgtcaaacaagcaggaaaaagcaggacggagaaccgtcgccgggccaaagaggag
atcaccaacatggaggaggagatgtccatggctgaggagcagctgcaagcccgccgagag
gagcaggacaagaagagcaacaccggcactgttaaggttgtgaaaatctgcacaccggga
agaaaagacgaggcccccatgacgcccagacgcacccctgctcgctttggactgtag
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