Cottoperca gobio: 115028825
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Entry
115028825 CDS
T07513
Name
(RefSeq) ATP-dependent RNA helicase DDX1
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115028825
03016 Transfer RNA biogenesis [BR:
cgob03016
]
115028825
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115028825
Spliceosome [BR:
cgob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115028825
Transfer RNA biogenesis [BR:
cgob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115028825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
115028825
NCBI-ProteinID:
XP_029318547
Ensembl:
ENSCGOG00000023730
UniProt:
A0A6J2S9W2
LinkDB
All DBs
Position
24:11189011..11195801
Genome browser
AA seq
740 aa
AA seq
DB search
MSAFSEMGVMNEIAQATEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPV
IQIVYETLKDQQEGKMGRASIKTGGAILNTWQMNPYDRSPAFAIGPDGLCCQSREFKEWH
GCRSTKGVTKGKYCYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFD
SYGEEFTMHDTIGCYLDLDKGQISFTKNGNDLGLAFEIPQHVKNQSFFASCVLKNAELKF
NLGGEEFKHAPKSGFVALNQAPEGHTVKSSQSGSARVSQVKGSSNAPKALIIEPSKELAE
QTLNNVKQCGKYVDNPKLRNLLVIGGVPAKDQLAALEQGIDIVVGTPGRLDDLISTGKLL
LSQVRFLVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSE
RIMHFPTWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLGKNHVRTDEVHAKDNTRPGAN
SAEMWSEAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQL
SCVCLHGDRKPNERKTNLERFKKKEVRLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYV
HRIGRVGRADKMGLAISLVAMEKEKVWYHVCPNRGRGCYSTRLKEDGGCTIWYNEKELLS
DIEEHLKCTITQCEPDIKVPLDDFDGKVTYGQRKALGGGNYKGHVDALAPTVLELANLER
EAQSSFLHLGYMPNQLFRAY
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgttttctgaaatgggggttatgaatgaaattgcgcaggctacggaagagttg
gactggctgctacctactgacatccaggcagagtccattccccttattctcggaggagga
gatgtacttatggcagcagaaactggtagtggtaaaacaggagccttcagtattccagtg
atccagattgtgtatgagaccctgaaggatcagcaggagggcaagatgggcagagcttcc
atcaagactggaggagctattttaaacacttggcagatgaatccttatgaccgcagccca
gcctttgcaattggtccagatggactgtgctgccagagcagggaatttaaagagtggcat
ggctgtcgctctacaaaaggagtcaccaaagggaagtactgttacgaggtgacctgccac
gaccagggtctatgtcgcattggctggtccaccagtcaggcagccctggacttgggaact
gataagtatggttttggttttggtgggactgggaagaaatccaacaacaagcagtttgac
agctatggagaggagttcaccatgcatgacactattggatgctacttggatctagacaag
ggacaaatttccttcactaaaaatggtaatgacctgggtttggcttttgagatccctcaa
catgtgaagaatcagtccttctttgcctcctgtgtgctcaagaatgcagagctgaagttc
aacttgggaggagaagagtttaaacatgcccctaagagtgggtttgttgccctcaaccag
gcgccagagggccacacagtcaaatcttctcagtcaggcagtgccagagtgagtcaggtg
aaaggctcatccaacgcacccaaagccctgatcatcgagccgtctaaagaattggccgaa
caaaccctcaacaatgtcaagcaatgtgggaaatatgtggataaccccaaactcaggaac
ctgttggtgattggtggtgtgcctgccaaagaccagctggctgctctggaacaggggatt
gacattgtggtgggaacaccaggcagactagacgacctcatatccactgggaagctcctt
ctctcccaagtccgctttctagtcctggatgagtgtgacggcctcctgtccgcaggctat
acagactttatcaacaggatccataatcaaatccctcaggtcacttctgacggcaagaga
ctgcaggtgatcgtttgttcggccacgctgcattcgtttgacgtgaagaagctgtccgag
cgcatcatgcactttcccacttgggtggacctgaagggggaggactctgttcccgagagt
gtccaccatgtggtagtgcccgtcaatccgaagaacgatcgcctctgggagcgcctgggc
aagaaccacgtccggactgatgaagtccatgctaaagacaacaccagaccaggagccaat
tctgcagaaatgtggtcagaagccatcaaggtgctgaagggcgagtacacagtgagggcc
atcaaagagcacaagatggaccaggccataatcttctgtcgcaccaagatcgactgtgac
aacatggaacagtacttcattcagcaaggaggaggtcccgacagtaaaagccaccagctt
tcctgcgtctgccttcatggtgatcgtaagcccaatgagcggaaaactaacttggagcgc
ttcaagaaaaaagaagtgaggctcttggtctgcacagacgtagcggccagaggaattgac
gtccacggagttccttatgtgattaacgtcactctgccagatgagaagcagaactacgtc
catcgtatcggcagagtcggaagagccgataaaatgggactggccatctccttggttgcg
atggagaaggagaaggtgtggtaccacgtttgcccaaaccgaggcagaggctgctacagc
acccgcctgaaggaggacggaggttgcaccatctggtacaacgagaaagagctcctgtca
gatattgaggagcatctaaagtgcaccatcacccagtgtgagccagacatcaaagtacct
ttggatgattttgatggaaaggtcacctatggtcagcgcaaggcattgggaggtggtaac
tacaagggccacgtggatgctctggccccgacggtcctggagctggctaacctcgagaga
gaagcccaatcttccttcctccacctgggatacatgccgaaccagcttttcagagcttac
tga
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