Cottoperca gobio: 115028826
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Entry
115028826 CDS
T07513
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX1-like
KO
K13177
ATP-dependent RNA helicase DDX1 [EC:
5.6.2.7
]
Organism
cgob
Cottoperca gobio
Brite
KEGG Orthology (KO) [BR:
cgob00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cgob03041
]
115028826
03016 Transfer RNA biogenesis [BR:
cgob03016
]
115028826
Enzymes [BR:
cgob01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
115028826
Spliceosome [BR:
cgob03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
115028826
Transfer RNA biogenesis [BR:
cgob03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
115028826
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SPRY
ResIII
CMS1
DUF5766
Motif
Other DBs
NCBI-GeneID:
115028826
NCBI-ProteinID:
XP_029318548
Ensembl:
ENSCGOG00000023730
UniProt:
A0A6J2S5K8
LinkDB
All DBs
Position
24:11210732..11217186
Genome browser
AA seq
734 aa
AA seq
DB search
MGVMNEIAQATEELDWLLPTDIQAESIPLILGGGDVLMAAETGSGKTGAFSIPVIQIVYE
TLKDQQXGKMGRASIKTGGAILNTWQMNPYDRSPAFAIGPDGLCCQSREFKEWHGCRSTK
GVTKGKYCYEVTCHDQGLCRIGWSTSQAALDLGTDKYGFGFGGTGKKSNNKQFDSYGEEF
TMHDTIGCYLDLDKGQISFTKNGNDLGLAFEIPQHVKNQSFFASCVLKNAELKFNLGGEE
FKHAPKSGFVALNQAPEGHTVKSSQSGSARVSQVKGSSNAPKALIIEPSKELAEQTLNNV
KQCGKYVDNPKLRNLLVIGGVPAKDQLAALEQGIDIVVGTPGRLDDLISTGKLLLSQVRF
LVLDECDGLLSAGYTDFINRIHNQIPQVTSDGKRLQVIVCSATLHSFDVKKLSERIMHFP
TWVDLKGEDSVPESVHHVVVPVNPKNDRLWERLGKNHVRTDEVHAKDNTRPGANSAEMWS
EAIKVLKGEYTVRAIKEHKMDQAIIFCRTKIDCDNMEQYFIQQGGGPDSKSHQLSCVCLH
GDRKPNERKTNLERFKKKEVRLLVCTDVAARGIDVHGVPYVINVTLPDEKQNYVHRIGRV
GRADKMGLAISLVAMEKEKVWYHVCPNRGRGCYSTRLKEDGGCTIWYNEKELLSDIEEHL
KCTITQCEPDIKVPLDDFDGKVTYGQRKALGGGNYKGHVDALAPTVLELANLEREAQSSF
LHLGYMPNQLFRAY
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgggggttatgaatgaaattgcgcaggctacggaagagttggactggctgctacctact
gacatccaggcagagtccattccccttattctcggaggaggagatgtacttatggcagca
gaaactggtagtggtaaaacaggagccttcagtattccagtgatccagattgtgtatgag
accctgaaggatcagcagngaggcaagatgggcagagcttccatcaagactggaggagct
attttaaacacttggcagatgaatccttatgaccgcagcccagcctttgcaattggtcca
gatggactgtgctgccagagcagggaatttaaagagtggcatggctgtcgctctacaaaa
ggagtcaccaaagggaagtactgttacgaggtgacctgccacgaccagggtctatgtcgc
attggctggtccaccagtcaggcagccctggacttgggaactgataagtatggttttggt
tttggtgggactgggaagaaatccaacaacaagcagtttgacagctatggagaggagttc
accatgcatgacactattggatgctacttggatctagacaagggacaaatttccttcact
aaaaatggtaatgacctgggtttggcttttgagatccctcaacatgtgaagaatcagtcc
ttctttgcctcctgtgtgctcaagaatgcagagctgaagttcaacttgggaggagaagag
tttaaacatgcccctaagagtgggtttgttgccctcaaccaggcgccagagggccacaca
gtcaaatcttctcagtcaggcagtgccagagtgagtcaggtgaaaggctcatccaacgca
cccaaagccctgatcatcgagccgtctaaagaattggccgaacaaaccctcaacaatgtc
aagcaatgtgggaaatatgtggataaccccaaactcaggaacctgttggtgattggtggt
gtgcctgccaaagaccagctggctgctctggaacaggggattgacattgtggtgggaaca
ccaggcagactagacgacctcatatccactgggaagctccttctctcccaagtccgcttt
ctagtcctggatgagtgtgacggcctcctgtccgcaggctatacagactttatcaacagg
atccataatcaaatccctcaggtcacttctgacggcaagagactgcaggtgatcgtttgt
tcggccacgctgcattcgtttgacgtgaagaagctgtccgagcgcatcatgcactttccc
acttgggtggacctgaagggggaggactctgttcccgagagtgtccaccatgtggtagtg
cccgtcaatccgaagaacgatcgcctctgggagcgcctgggcaagaaccacgtccggact
gatgaagtccatgctaaagacaacaccagaccaggagccaattctgcagaaatgtggtca
gaagccatcaaggtgctgaagggcgagtacacagtgagggccatcaaagagcacaagatg
gaccaggccataatcttctgtcgcaccaagatcgactgtgacaacatggaacagtacttc
attcagcaaggaggaggtcccgacagtaaaagccaccagctttcctgcgtctgccttcat
ggtgatcgtaagcccaatgagcggaaaactaacttggagcgcttcaagaaaaaagaagtg
aggctcttggtctgcacagacgtagcggccagaggaattgacgtccacggagttccttat
gtgattaacgtcactctgccagatgagaagcagaactacgtccatcgtatcggcagagtc
ggaagagccgataaaatgggactggccatctccttggttgcgatggagaaggagaaggtg
tggtaccacgtttgcccaaaccgaggcagaggctgctacagcacccgcctgaaggaggac
ggaggttgcaccatctggtacaacgagaaagagctcctgtcagatattgaggagcatcta
aagtgcaccatcacccagtgtgagccagacatcaaagtacctttggatgattttgatgga
aaggtcacctatggtcagcgcaaggcattgggaggtggtaactacaagggccacgtggat
gctctggccccgacggtcctggagctggctaacctcgagagagaagcccaatcttccttc
ctccacctgggatacatgccgaaccagcttttcagagcttactga
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