Corynebacterium gottingense: CGOTT_04640
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Entry
CGOTT_04640 CDS
T09376
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgoi
Corynebacterium gottingense
Pathway
cgoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CGOTT_04640 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgoi03019
]
CGOTT_04640 (deaD)
03009 Ribosome biogenesis [BR:
cgoi03009
]
CGOTT_04640 (deaD)
Enzymes [BR:
cgoi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CGOTT_04640 (deaD)
Messenger RNA biogenesis [BR:
cgoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CGOTT_04640 (deaD)
Ribosome biogenesis [BR:
cgoi03009
]
Prokaryotic type
rRNA helicases
CGOTT_04640 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
UvrA_inter
CMS1
adh_short
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WJZ12872
LinkDB
All DBs
Position
997625..999673
Genome browser
AA seq
682 aa
AA seq
DB search
MSNSENATGSENGPDMNLSETQNTPQDVAADAVEPAAAEDTRDAGSSEHTGASVQKTAEA
TEKVNTEATEATTPNESSEENAEPENGFTTLSLPDNVIAAVKKVGFEKPSAIQAETIPLL
MQGRDVVGLAQTGTGKTAAFALPILSRIDTSKRYPQALILAPTRELALQVSDSFQSFADH
LGGVHILPIYGGQAYGIQLSGLRRGAQIIVGTPGRVIDHLEKGSLDISSLRFLVLDEADE
MLNMGFQEDVERILEDTPDEKQVALFSATMPKAIRRISRDYLNDPEEVTVKSETRTNTNI
TQRYLFTAHRNKLDAITRILEVTEFEAMIVFVRTKNETEELAEKLRARGFSAAAINGDIA
QQQRERTVDQLRDGRLDILVATDVAARGLDVERISHVLNFDIPNDTESYVHRIGRTGRAG
RSGEAILFVTPRERRMLRSIERVTNAKIEEMDLPTVDEVNESRKAKFMDSITESLEASDL
QIFKSMVREYSAANNVPMDDIAAALATQALAGDEFLMKEPPKDKRDRRDRDRWDRDDRGG
RGRRGRDDRDDRGRGKRRHNDSENFDTYRLDVGKRQHVRPGAIVGALANEGGLNSKDFGR
ITIGGDFTLVELPKQLDKKVLDRLSDTRISGQLINIQRDHGAPPRDRGGRGRRGGFGDHK
DRRDKFRGDRRDRGGRGKRHWD
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgagcaattccgaaaacgcgaccggcagcgaaaatgggccggatatgaacttgtcggaa
actcagaacaccccgcaggatgtcgcagcggacgcagttgagcctgccgctgcagaagac
accagggatgcgggttcctctgagcacaccggcgcttctgtgcagaagactgcagaagcc
accgagaaagtaaatactgaagcaaccgaagcaacgacgccgaacgagtccagcgaggag
aatgcagagccggaaaacggcttcaccacgctgagcctgccggacaacgtgatcgcggca
gtgaagaaggtcggctttgaaaagccgtccgcaatccaggcggagacgattccgctgctg
atgcagggccgcgacgtcgtcggcctggcgcagaccggtacgggcaagaccgcggcgttc
gcgctgccgatcctgagccgcatcgacacgagcaagcggtacccgcaggcactcatcctc
gcgccgacgcgtgagttggcgctgcaggtgtccgattccttccagtccttcgccgaccac
ctgggcggcgtgcacatcctgccgatttacggcgggcaggcgtacggcattcagctgtct
ggcctgcgtcgcggcgcgcagatcatcgtgggcaccccgggccgcgtcatcgaccacctg
gagaagggctcgctggacatctccagcctgcgcttcctggtgctggacgaggccgacgag
atgctcaacatgggcttccaggaggacgtcgagcgcatcctggaggacacgccggacgag
aaacaggtggccctgttctccgcgacaatgccgaaggcgatccgccggatttcccgcgac
tacctcaacgaccccgaagaggtcaccgtcaagtcggagacccgaacgaacaccaacatc
acgcagcgctacctgttcacggcgcaccgcaacaagctcgacgcgatcacccgcatcctt
gaggtgaccgagtttgaggcgatgatcgtcttcgtccgcacgaagaacgagaccgaggag
ctggccgagaagctgcgcgcccgcggattctccgccgccgccatcaacggcgacattgcg
cagcagcagcgcgagcgaacggtggatcaactgcgcgacggccgcctggacatccttgtg
gccaccgacgtcgccgcccgcggcctcgacgtcgagcgcatctcgcacgtgctcaacttt
gacatcccgaacgacaccgagtcgtacgtccaccgcatcggccgcaccggccgcgcgggt
cggtccggcgaggcgatcctctttgtcaccccgcgcgagcgtcgcatgctgcgctccatc
gagcgcgtgaccaacgcgaagatcgaagagatggacctgcccaccgtggacgaggtcaac
gagagccgcaaggcgaagttcatggactccatcaccgaatccctcgaggcgtccgacctg
cagatcttcaaatccatggtgcgcgagtactcggcggcgaacaacgtgccgatggatgac
atcgccgcagcgctcgccacgcaggcgcttgcgggcgacgagttcctcatgaaggagccg
ccgaaggacaagcgcgaccggcgcgatcgcgaccgttgggatcgcgacgaccgtggtggg
cgcggccgtcgcggacgtgacgaccgtgacgatcgcgggcgcggcaagcgccgccacaac
gacagcgagaactttgacacctaccgcctggacgtgggcaagcgccagcacgtccggccg
ggtgccatcgtcggcgcgctggcgaacgagggtggcctcaattccaaggacttcggccgc
atcaccatcggtggagacttcaccctggtggagctgccgaagcagctggacaagaaggtc
ctggaccggctctccgacacccggatttccggtcagctgatcaacatccagcgcgatcac
ggcgcacccccgcgcgaccgaggcggtcgcgggcgccgcggtggcttcggcgaccacaag
gatcgccgggacaagttccgcggcgatcgccgcgacaggggcgggcgcggtaagcgtcac
tgggactag
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