Cytobacillus gottheilii: J1899_04330
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Entry
J1899_04330 CDS
T07465
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cgot
Cytobacillus gottheilii
Brite
KEGG Orthology (KO) [BR:
cgot00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cgot03009
]
J1899_04330 (rlmD)
Enzymes [BR:
cgot01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
J1899_04330 (rlmD)
Ribosome biogenesis [BR:
cgot03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
J1899_04330 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
MTS
Methyltransf_25
Methyltransf_15
Cons_hypoth95
PrmA
UPF0020
Methyltransf_11
Ubie_methyltran
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QVY62337
LinkDB
All DBs
Position
896165..897544
Genome browser
AA seq
459 aa
AA seq
DB search
MTQNQTAQLKLGQTFPLTIKRLGINGEGVGYFKKQVVFVPGALPGEEVVVEATKVHPKFS
EGKIKKVRKKSQHRVVPPCPVYDQCGGCQLQHLEYTQQLKEKRDIVIQSLERHSRLKVED
LNIKQTIGMDNPWSYRNKSSFQVGTQNGKVLAGLYGLNSHKLINIEQCAVQHPQTNAAVE
TVKQVLQDLQIPIYHEKTRKGIVRTIVARVGIQTGELQIVLITAKKELPKKALIIEKIKS
RLPEVKSIIQNINGQKTSLIFGEETFNLDGSDFIQETLGDLQFELSARTFFQLNPEQTVK
LYDEVKKAAALTGKEKVADAYCGVGTIGLWVADGASEIRGMDIIPESIQDAKKNAKRHGI
KHAKYVTGKAEELLPKWVKEGWKPDVIIVDPPRTGLDRALIQTILTVKPKKVVYVSCNPS
TLAKDIDVLSKKYKIEMIQPVDMFPQTSHVEVVTELKLK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaaaccaaacagctcagttaaaattaggacaaacctttccgctgacaattaaa
cgacttggcatcaatggagaaggagtcggctactttaaaaaacaagttgtcttcgttcca
ggcgctcttccaggcgaagaagttgtcgttgaagcgacaaaggtacatccgaaattttca
gaaggtaaaataaaaaaagtacgcaaaaagtctcagcatcgcgttgtgccgccttgtccg
gtctatgaccagtgtggaggatgccagctgcagcatctggaatacacccagcagctcaag
gaaaaacgcgatatcgtcattcaatcattagaacgccattcaagattgaaggttgaagat
ttaaatataaaacaaaccattggcatggacaatccatggagctaccggaataaaagctca
ttccaagtaggaacacaaaacggcaaagtgcttgcaggactatacggactgaactcccac
aaactcatcaacatcgagcaatgtgccgttcagcatccgcaaacaaatgctgcagtcgaa
acagtcaaacaagtgcttcaggatctgcaaatcccgatttaccatgaaaaaacaagaaaa
ggaatcgtccgcacaattgtcgcccgtgtcggcattcaaacaggcgaactgcaaatcgtc
ctgatcacagctaaaaaagaactgcccaaaaaggcattaataatagaaaaaattaaaagc
agactgccagaagtcaaatccatcattcaaaacattaacggccaaaaaacgtcgctaatc
tttggggaagaaacgttcaacctcgacggcagtgatttcattcaagaaacattaggcgat
ctgcaatttgaattatcagcaagaaccttcttccagctgaaccctgagcaaaccgtaaag
ctttatgatgaagtcaaaaaagcggccgcactaacgggtaaagaaaaagtcgctgatgca
tattgtggtgttggaacaatcggtttatgggttgctgacggagcgtcagaaatccgcggg
atggatatcattccagaatccattcaagatgcgaagaaaaatgcgaaacgtcatggcatc
aagcatgcaaaatacgttaccggcaaagcggaagaactgcttccaaaatgggtaaaagaa
ggctggaaaccagatgtcatcatcgtagatccgccaagaacaggactggaccgcgcgcta
atccagaccattcttaccgtgaaaccaaagaaagtggtttatgtttcatgtaatccatct
acacttgcgaaggatattgatgtattaagcaagaagtataagattgaaatgattcagccg
gtggatatgtttccgcagacttctcatgttgaggtagtgacggagttaaaattaaaataa
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