Corynebacterium genitalium: KBP53_03965
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Entry
KBP53_03965 CDS
T10365
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgp Corynebacterium genitalium
Pathway
cgp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KBP53_03965 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgp03400
]
KBP53_03965 (mfd)
Enzymes [BR:
cgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KBP53_03965 (mfd)
DNA repair and recombination proteins [BR:
cgp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KBP53_03965 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
AAA_16
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UUA90119
LinkDB
All DBs
Position
810539..814213
Genome browser
AA seq
1224 aa
AA seq
DB search
MANHTEDLPMLAGVLTQAAGDPKLTGLRARVGDPALHVTGIDQVRPWAAAALSREVPVLL
ITATGHEAEDLAAEIAALIGQEQVALMPALETLPHERLSPAADVIGARNKVVHNIASTRV
VVASARAACQPVLPPVAPVTVKLGEEYDFGELTETLVRFAYEHVDMVAKRGEFATRGGII
DVFPTTAEHPVRIEFWGDEATDLRTFAVADQRTIDDVASVEMHPARQLLIDDSVRTRAQA
LSTAHSGNPTLAQLLERVSEGTYVDGMEAIVPALTDASFSVLPELMPAGSIVLVTSPEKV
RARIADLQATDQEFLEAGWEAAAMGAEGPVAAEGLDVSASSYRSFESLEVSARDADNAWW
TFAPPGMFTANDEATLPLEYEPAPAPKGDPKQIEALYGQVKLHLQGGGRAAFVAPAKGTI
ERMAERLRENSVSARIATPGLEPVDGQVTLYQALSHAGLSFPGPGLVVFTETDVTGNRVG
DIAGAKRRAPRRRNRVDPLALKPGDYVVHDTHGIGRFVKMAERTIGTGSDAARREFIVLE
YQPAKRGQPADMLWVPMDSLDLLSKYSGGEQPSLSKMGGSDWKNTKRKARAAVREIAGEL
VELYAKRASAPGHAFAADSPWQMEMEDNFPFVETEDQMAAIEAVKSDMEKPTPMDRVIVG
DVGFGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYSTFSQRMDGFGVEIRELSRFTT
AADAKKISAGLADGSVDIVIGTHRLLQTGVQWKNLGLIVVDEEQRFGVEHKEHIKALKSH
VDVLTMTATPIPRTLEMSLTGIREMTSITTPPEDRHPVLTYVGPQEDKQVAAAIRRELLR
DGQVFYIHNKVADIEKTARHLRTLVPEARIVVAHGQMSEQVLEQTVQGFWGREFDVLVCT
TIVETGLDIANANTLIVENAQNMGLSQLHQLRGRVGRSRERGYAYFLYPKDKVLTETSYD
RLATIAQNNDLGAGMAVAQKDLEMRGAGNVLGAEQSGHIAGVGFDMYVRLVGEAVETFKS
LMQGEVVDATDHGPKEIRIDLPVDAHIPETYINSERLRLESYRKLAAARDEDELTTVADE
LVDRFGDLPAEVQRLFAVARVRHQARKAGVADITMQGTRLKFHPVDMADSKQIRLKRLYP
GANYRAAAKAIQVPFPREGGTKKALNAPNLRDEELLQWVADFLSEMFDVDPVSVSGSTAV
GDGAADGAAGNGDKRKKRVFSVSE
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atggccaaccacaccgaagaccttcccatgctcgccggagtgctcacgcaggctgcgggc
gacccgaagctgacgggcttgcgcgcacgcgtgggggatcccgcgctccacgtcaccggc
atcgaccaagtgcgtccgtgggctgcggcggcgctctcacgtgaggtgccggtcctgctc
attaccgccaccgggcatgaggcagaggatctcgcggcggagatcgcggcgctcatcggc
caggagcaggtcgctttgatgccggcgctggagaccttgccgcacgagcgcctttcgcct
gcggcggatgtcatcggtgcgcgcaacaaggtggtgcacaacatcgcatccacgcgtgtg
gtcgtggcgtcggcgcgcgcggcctgccagccggtgctgccgccggtggccccggtcacg
gtgaaactcggcgaggaatacgacttcggtgagctcaccgaaaccctggtccgcttcgcg
tacgagcacgtggacatggtggccaagcgcggcgagttcgccacccgcggcggcatcatc
gatgtgtttcccacgaccgccgagcaccccgtccgcatcgagttctggggtgatgaggcc
actgatctgcgcacgttcgcggtggctgatcagcgcaccatcgatgatgtcgcctccgtc
gagatgcaccccgcgcgccagttgcttatcgacgactccgtccgcacccgcgcccaagcc
ctttccaccgcgcacagcggcaacccgacgttggcccagttgctggagcgcgtatcggaa
gggacctacgtcgacggcatggaggcgatcgttcccgccctgacggatgcgagcttctcc
gtgctgccggagctcatgccggccggctcgatcgtgttggtgacctctccggagaaggtg
cgcgcccgcattgctgacctgcaagcgaccgaccaagagttcctcgaagcgggctgggag
gccgccgccatgggagcagagggccctgtcgccgcggaaggactcgacgtgtcggccagc
tcctaccgctccttcgaatcactcgaggtctcggcgcgcgacgcggacaacgcctggtgg
acgttcgcaccgcccggcatgttcaccgctaatgatgaggccaccttgccgctcgagtac
gagcccgcccccgcaccaaagggcgacccgaagcagatcgaggcgctgtacggccaggtg
aagctgcacctgcagggcggcggccgcgctgcgttcgtcgcaccagccaagggcacgatc
gagcgtatggcggaaaggctgcgcgaaaacagcgtctccgcgcgcattgctaccccgggc
ctggagccggtcgatggccaggtgactctctatcaggctctgtcccatgccggcctgagc
ttccccggcccgggtctggtcgttttcactgagaccgacgtgaccggcaaccgtgtcggc
gacatcgccggggccaagcgtcgcgctccgcgccgccgcaaccgcgtcgacccgctcgcg
cttaagccgggggactacgttgttcatgacactcacggcattggccgctttgtgaagatg
gctgagcgcacgatcggcaccggctctgacgctgcccggcgcgagttcatcgtgctcgag
taccagcccgccaagcgcggccaacccgcggacatgctgtgggttccgatggattccttg
gacctgctgagcaagtattcgggcggggagcagccgtcgttaagcaaaatgggcggctcc
gactggaagaacacgaagcgcaaagctcgcgccgcggtgcgtgaaatcgccggtgaactt
gtggagctctatgcgaaacgcgcgtccgcgccggggcacgcgttcgcggcggattcgccc
tggcagatggagatggaggacaacttccccttcgtcgaaaccgaagaccagatggctgcg
atcgaggccgtgaagtccgatatggaaaagcccacgccaatggaccgcgtcattgtcggt
gacgttggcttcggcaagaccgaggtcgccgtgcgcgccgcgttcaaggcggtgcaggac
ggcaagcaggtcgccgtgctcgtgcccaccacactgctcgcccagcagcactactcgacg
ttttctcagcgcatggacgggttcggggtggagattcgcgagctgtcgcgcttcaccacg
gccgcggacgcgaagaagatcagcgccgggcttgccgacggctccgtcgacatcgtcatt
ggcacccaccggctgctgcagacgggtgtgcagtggaagaacctggggctcatcgtcgtc
gatgaggagcagcgctttggtgtcgagcacaaggagcacatcaaggccctgaaatcgcat
gtcgacgtgctcaccatgaccgcgacgccgatcccgcgcaccctggagatgtccctgacc
ggcatccgcgagatgacctcgatcacgaccccgccggaggaccgccacccggtgctgacc
tacgtcggcccgcaggaggacaagcaggtcgccgccgcgatccgccgtgagctgctgcgc
gacggccaggtgttttacatccacaacaaggtcgccgacattgagaagaccgcccgccac
ctgcgcacccttgtaccggaggcgcgcatcgtcgtcgcccacggccagatgagtgagcag
gtgctcgaacagaccgtgcaagggttttggggccgcgaattcgacgtgctcgtgtgcacg
acgatcgtggaaactggcttggacattgccaacgccaacacgctgatcgtcgaaaacgct
cagaacatgggtctgtcgcagctccaccagctgcgtggacgcgtcggccgttcccgcgag
cgcggctatgcctacttcctgtaccccaaggacaaggtgctcaccgagacgtcctacgac
cgcttggccaccatcgcccagaacaacgacttgggcgccggcatggccgtcgcgcagaag
gacctggagatgcgcggcgccggcaacgtgctcggtgcggagcagtccggacacatcgcc
ggagtcggcttcgacatgtacgtccgcctcgtcggcgaagcggtggagactttcaagtcc
ctcatgcagggtgaagtcgtcgacgccaccgaccacggccccaaggaaattcgcatcgac
ctgcctgttgacgcccacattccggagacctatatcaactccgagcgcctacgcttagag
agctaccgcaagctagccgccgcccgcgacgaggacgagctgacaacggtcgccgacgaa
cttgtcgaccgtttcggcgatcttcccgccgaggtccagcgtctcttcgcggtggcacgc
gtgcgccatcaggcccgcaaggccggggttgctgacatcaccatgcagggcacccgcctg
aagttccacccggtggacatggccgactcgaaacagatccggctgaagcgcctctacccg
ggcgcgaactaccgtgccgccgcaaaggccatccaggtgcctttcccgcgcgaaggcggg
acgaagaaggcgctcaacgcacccaacctgcgcgacgaagaactgctccagtgggtcgcc
gacttcctgtctgagatgttcgacgtggacccggtgtccgtgtcggggtccacggcagtg
ggggatggtgctgcggacggcgcagccgggaacggcgataagcggaagaagcgtgtgttc
tcggtgagcgagtag
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