Nakaseomyces glabratus: 2889562
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Entry
2889562 CDS
T01024
Symbol
GVI51_J04763
Name
(RefSeq) uncharacterized protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cgr
Nakaseomyces glabratus
Pathway
cgr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
2889562 (GVI51_J04763)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgr03019
]
2889562 (GVI51_J04763)
03041 Spliceosome [BR:
cgr03041
]
2889562 (GVI51_J04763)
03009 Ribosome biogenesis [BR:
cgr03009
]
2889562 (GVI51_J04763)
03016 Transfer RNA biogenesis [BR:
cgr03016
]
2889562 (GVI51_J04763)
Enzymes [BR:
cgr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
2889562 (GVI51_J04763)
Messenger RNA biogenesis [BR:
cgr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
2889562 (GVI51_J04763)
Spliceosome [BR:
cgr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
2889562 (GVI51_J04763)
Complex C
U4/U6.U5 tri-SnRNP related factors
2889562 (GVI51_J04763)
Ribosome biogenesis [BR:
cgr03009
]
Eukaryotic type
Pre-60S particles
Helicases
2889562 (GVI51_J04763)
Transfer RNA biogenesis [BR:
cgr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
2889562 (GVI51_J04763)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
DUF4047
Helicase_dom4_arc
Death_3
AAA_22
YodE
nSTAND3
HTH_Tnp_ISL3
AAA_16
Motif
Other DBs
NCBI-GeneID:
2889562
NCBI-ProteinID:
XP_447920
UniProt:
Q6FPC4
LinkDB
All DBs
Position
J:complement(488428..491625)
Genome browser
AA seq
1065 aa
AA seq
DB search
MDSNDLFDVFSAVPEEVPDVSDEEIENDSAKVPKSNEKHTLTSDEEDGESNKKVKPNKTS
GSKKETSKIIPIVADDFEQEASREVDASAGLSTQATTEVEEDGKVKLSHQVRHQVALPPF
YDYKPIGQHKRTNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQS
LREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMTTEILRSMLYR
GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICK
IHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMTSIGNQAGDDP
NSTESRGKKGQTFKGGAAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSK
LDFNSDDEKDALTKIFNNAIALLPENDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIE
ILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG
LDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFMLENS
FFQFQNVIAVPVMEKKLIEYQQQYDNIHIEDESGIKEYYEVKQTLKGYYEDVRKVMTHPA
HLLSFLQPGRLIEVVVDGNQRYGWGAVVDFAKRVNKRNPTAVYSDYDSYIVNVVVSSMYV
DSPINLIKPFNPAFPEGIRPAQEGEKSLCAIIPITISSITNVGNLRLFMPKDVKASGQVD
IVGKSLKEVGRRFPDGIPLIDPVKHMKITDDDFMKLQKKIQVLEEKLKTNPLHGSVKLNE
LYEAYNSKHELSDAMKKLRAKITDSQAVIQLDDLRKRKRVLRRLEFCTPNDIIELKGRVA
CEISSGDELLLTELIFNGNFTELKPEQAAALLSCFAFQERCKEAPKLKPELSEPLKDLRE
LAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGASFTQICKMTDVYEGSLIRMF
KRLEELVKELVDVANTIGNQALREKMEAVLKLIHRDIVSAGSLYL
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atggattcgaacgatttgtttgatgtcttctcggctgtgcctgaagaagtacctgatgta
tcagatgaagagattgagaatgactctgccaaggtaccgaaatcaaatgaaaagcatacg
ctaacttcagatgaagaagatggcgagtctaataagaaggtgaaacctaacaaaacaagt
ggttcaaagaaggaaacttcaaagattattccaattgtagcagatgacttcgaacaggaa
gcctcgagagaagtggatgcatccgcaggattatctactcaagctactactgaggttgaa
gaggatggtaaagtcaaactttcacatcaagtccgtcatcaagtcgcactacctccattc
tacgattataaacctattggtcagcataagagaaccaatgaagcccgtacttaccctttt
acgttagaccctttccaagatactgctatctcttgtatagatagaggtgaatctgtttta
gtttcagctcacacatctgcaggtaagacagtggtggctgaatatgccattgcccaatct
ttgagagagaagcaaagagttatttacacatcaccaatcaaggctctttcgaatcagaaa
tatagagaactgttggctgaatttggtgatgttggcttaatgaccggtgatattactatt
aatcccgatgcaggttgtttggttatgaccaccgaaattttgagaagtatgctttacaga
ggtagtgaggttatgagagaagtggcatgggttatctttgatgaggtccattatatgaga
gacaaggaacgtggtgttgtttgggaagaaactatcattctactcccagataaggtgcgt
tatgtcttcttatctgccaccatcccaaatgcaatggagtttgctgaatggatatgtaaa
atccattcccaaccatgtcatattgtctatacaaattttagacctactccacttcagcat
tatctgttccccgcacatggtgatggtatttatttagttgtagatgaaaagagtactttt
agagaagagaattttcagaaagctatgacttcaattgggaaccaagctggtgatgaccct
aactcaaccgaatcaagaggtaagaagggtcaaacatttaaaggtggagcagcaaaaggt
gacgcaaaaggtgatatatataaaattgtcaagatgatttggaaaaaaaaatataatcca
gtaattgtcttctcttttagtaaacgtgattgtgaagaactggctctaaaaatgtctaag
ctggacttcaattctgatgatgaaaaggatgcattgactaaaatattcaacaatgcaatt
gcattactgcctgaaaacgacagagaattaccacaaatcaaacacattctaccattgcta
aggagaggtattggtatccatcattcggggttattacctatattaaaggaagttatcgaa
atcctgttccaagagggtttcctcaaggtgctatttgctacagaaactttttccatcggt
ttgaatatgcctgctaaaaccgttgtttttacatctgttagaaaatgggacggtcaacaa
tttagatgggtatctggtggtgaatatattcaaatgtctggtcgtgccggtcgtcgtggt
ctggatgatcgtggtattgtcattatgatgattgatgaaaagatggaacctcaggtcgcc
aagggtatggttaaaggtcaagctgacaggctggactctgcgttccatttgggctataac
atgattttgaatttgatgagagttgaaggtatctcccctgagtttatgttggagaactct
ttctttcaattccaaaatgtcattgcagttccagtaatggagaaaaaactaattgaatat
cagcaacaatatgataatatccatattgaagatgagtcaggaattaaagaatactatgaa
gtcaagcagaccttgaaaggttattacgaagatgtaaggaaagtaatgactcatccagca
catttattgagtttcttacaaccaggcagattaatcgaggttgtagttgatggaaatcaa
agatatggttggggtgctgtcgttgactttgcaaagagagtaaacaagaggaaccctaca
gctgtatattccgactatgactcttatattgtaaatgtggttgttagctcaatgtatgtc
gactcacctattaacttaattaaaccattcaatcctgcattccctgaaggtattcgtcca
gcccaggaaggagaaaaatcactatgtgctattattccaattactatatcatcaatcaca
aatgtcggtaacctaaggctatttatgccaaaggatgtcaaagcttccggtcaagtcgat
attgttggtaaatcattgaaggaagttggaagaagattcccggatggaatcccattgata
gatccagtcaagcatatgaaaattactgatgatgatttcatgaaactgcaaaagaaaatt
caagtcctagaagaaaaactaaaaactaacccattacacggttctgtcaagttaaatgaa
ctctatgaagcctacaactctaagcatgagttatccgatgcaatgaagaaactacgagca
aaaattactgattcacaagctgttatccagctagatgacctaaggaaacgtaagagagtt
ttacgtagactagaattctgtacaccaaatgacattattgagctaaaaggtagagttgcg
tgtgaaatttcaagtggtgatgaattgcttttaacagagttgattttcaatggtaacttt
actgaactgaaaccagaacaagctgctgcattactttcatgttttgcattccaagaacgt
tgcaaagaagcacctaaactaaaaccagagctatccgagccattgaaagatttgagggaa
ctagcagccaaaatagcaaaaatcatgaaagactctaagattgaggtagtagaaaaggat
tatgtagagagtttccgccacgaattgatggaagttgtctacgagtggtgtagaggtgcc
tcttttactcaaatttgtaagatgactgacgtctacgaaggttctttaatcagaatgttc
aagagattggaagaacttgtaaaggaactggtcgatgttgcaaacacaattggtaaccaa
gcattaagggagaaaatggaagcagtcctgaaactaatacatagagatattgtttctgct
ggctctttgtatctatag
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