Campylobacter gracilis: CGRAC_1340
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Entry
CGRAC_1340 CDS
T04020
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
cgra
Campylobacter gracilis
Pathway
cgra02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cgra00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CGRAC_1340 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cgra03021
]
CGRAC_1340 (rpoD)
Transcription machinery [BR:
cgra03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CGRAC_1340 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
MCR_beta_N
HTH_10
Motif
Other DBs
NCBI-ProteinID:
AKT92783
LinkDB
All DBs
Position
1395765..1397645
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AA seq
626 aa
AA seq
DB search
MASPKDALSPIEQFFDENQKSYITYERLIKFFDKAPTATAVKKVEALTKKFDVELISAAE
ISKIKNLEDAKLKEATQKKLLDEGWDEEFDLSSDVELLEWSRSDSPVRMYLREMGQIPLL
TKEEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLINRERRVKELFKSFDDSDEE
GEEEDEEELPEDDYDDEEDEESADEAKQRRSKKNDKRALKVIESFKALEKAKKDWMKFAE
KNAEAIKESKGILSKLNLAFKKKILKEKLMDLGPTSKLITEIVKSMETALKSDEGFEKEL
KRLEYKLPMFSAELRENHKKILKEITKLSKDDIIARVPEATMVSTYVDIKKLFLTKEASK
KSFNLEPERLKEILEQIKRGKRISDNAKARMAKSNLRLVVSIAKRYTNRGLPFLDLIQEG
NIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINRINKITR
KYMQEGGKEPDINVIAQEVGLSVDKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDKSS
VSPIEQILKSDLKEQIDDILEQLNDRERTVIRMRFGLLDDESDRTLEEIGKELNITRERV
RQIESSAIKKLKHPKIGRKLKTYIES
NT seq
1881 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcccaaaagacgccttaagccccatcgagcaatttttcgacgaaaatcagaaa
agctacatcacctacgaaagactgataaaatttttcgacaaggctcccaccgcgacggcc
gttaagaaagtcgaagcgcttacgaaaaaattcgacgtcgagctgatctccgccgcagaa
atctccaaaatcaaaaatttagaggatgcgaaactcaaagaagccacgcaaaaaaagctg
ctggacgagggctgggacgaggaatttgacctatccagcgacgtcgagcttttggagtgg
agccgttcggacagcccggtgcggatgtatctacgcgaaatgggacagatcccactgcta
accaaagaagaagagatcgagatcagcaaaaaaatcgagctcggcgaggacatcatcatc
gacgcgttttgctcggtgccgtacttaatagactttattttagactataaagagccactt
atcaaccgcgaacgccgcgtgaaggagcttttcaagagctttgacgacagcgacgaagag
ggtgaagaggaggacgaagaggagctgccggaggatgattacgacgacgaggaggatgag
gagagcgcggacgaggcgaagcaaaggcgatccaaaaagaacgataagcgcgctctaaag
gtcatcgaaagcttcaaggctcttgaaaaagccaaaaaggactggatgaaatttgccgag
aaaaacgccgaagcgattaaagagagcaagggaattttatcgaagctaaacttggcgttt
aaaaagaaaattttaaaagaaaagctcatggatctggggcctacgagcaagctcatcacc
gagatcgtaaaatcgatggagaccgcgctaaaaagcgacgagggctttgaaaaagagctc
aagcgcctggaatacaagctgccgatgtttagcgccgaactgcgcgaaaatcacaaaaaa
atcctaaaagagatcacgaaactcagcaaagacgacattatcgcgcgcgtgccggaagcc
acgatggtctcgacctacgtcgatattaaaaagctctttttgaccaaagaggcgagcaaa
aaaagcttcaacctcgagcccgagcggctgaaagaaattttagagcagatcaagcgcggc
aagcgcattagcgacaatgcaaaggcgcgcatggcgaagtccaacctgcgcctggtcgtc
tccatcgctaagcgctataccaaccgcgggctgccgtttttagacctcatccaagagggc
aatatcggacttatgaaggcagtggataaatttgaatacaagcgcggctataaattttct
acctacgcgacgtggtggatccgccaggcgatcagccgcgccatcgccgatcaagcgcgc
acgatccgcattccgatccatatgatcgagacgataaatcgaattaataaaatcacacgc
aaatatatgcaagaaggcggcaaggagcccgatatcaacgtcatcgcgcaagaggtaggc
cttagcgtcgataaagtaaagcaagtcatcaaaatcacaaaggagccgatcagcctagaa
gcgccgatcggaaacgaggatgacggtaaattcggcgatttcgtcgaggataaaagctca
gtttcgccgatcgagcaaattttaaaatccgacctaaaagagcagatcgacgatatctta
gaacagctcaacgaccgcgagcgcacggtaatccgcatgcgattcggactgcttgacgac
gagagcgaccgcacgctcgaagagatcggcaaggagctcaacatcacccgcgagcgcgtc
cgccagatcgaaagctcggcgatcaaaaagctaaaacacccaaagatcggccgcaaacta
aaaacctatatcgaaagctag
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