Corynebacterium glutamicum R: cgR_1007
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Entry
cgR_1007 CDS
T00501
Name
(GenBank) hypothetical protein
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgt
Corynebacterium glutamicum R
Pathway
cgt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
cgR_1007
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgt03019
]
cgR_1007
03400 DNA repair and recombination proteins [BR:
cgt03400
]
cgR_1007
Enzymes [BR:
cgt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
cgR_1007
Messenger RNA biogenesis [BR:
cgt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
cgR_1007
DNA repair and recombination proteins [BR:
cgt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
cgR_1007
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_Cmi2_C
Motif
Other DBs
NCBI-ProteinID:
BAF53983
UniProt:
A0AB72V9I3
LinkDB
All DBs
Position
1113338..1115389
Genome browser
AA seq
683 aa
AA seq
DB search
MNATREEANNLLAGIAGPGAQLRDDQWVAIDALVNQRKRMLVVQRTGWGKSAVYFIAAKL
LRARGAGAAVIISPLLALMRNQVASAERAGIKAATLNSANMTEWETIQQQVVSGDADVLL
ISPERLNNPDFRDTILPRLAAETGLVVVDEAHCISDWGHDFRPDYRRIRDLLAGLSPNIP
VLATTATANDRVVEDVRAQLGDGTGLLRGGLDRESLYLSVVNLPNPTERPAWLATHLKDL
TGSGIIYCLTVSAAHDLADALNSVGWNVAAYTGRTEAGERERLEHALINNEIKALVATSA
LGMGFDKPDLGFVLHMGSPSSPVSYYQQIGRAGRGTARADVILLPGTEDKEIWEYFASVS
FPREEVVRQLLSVLTDEAQSTVKLESQVDLSRSRLEQVLKVLDVDGAVKRVRGGWVSTGQ
EWIYDAERYAGLEQARKIEQQSMVNYQNTIECRMLYLRKELDDVEATTPCGRCDNCTGKT
WGLDTDASITLKVDQQLQTPGVKIAPRKMWPTGISVRGKIAGLEEGRALGRLNDIARGPA
LKALLDSGAYSDDPWMARIIEVLKNWGWTNRPANVVALGNTNFGSTEMIIQVAQSIAAVG
RMNFAGVLPVLPGAEEVMAQNSAYRVEALLKQWDWSKGLQLVPGPILLVTDLIDTGWSVT
VAGNGIAQRTSEKVLPFALASRG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaacgagggaagaagccaacaacttattagctggaatcgccggacctggcgca
cagctccgcgatgatcaatgggtagcaattgatgcattggtaaaccaacgcaaacggatg
ctggtggtgcaaaggaccggttggggtaaatcagccgtctacttcatcgccgccaaactg
ttaagagcacgcggtgcgggcgcagccgtgattatttctccactactagccctcatgcgt
aaccaggtggcgtccgccgaacgcgccgggattaaggcagcgacactcaacagtgccaac
atgacggaatgggaaaccatccagcagcaagtcgtttcaggcgacgccgatgtgctgtta
atttcacctgaacgcctcaacaacccagactttagagacaccattttgcctcgactagca
gctgaaacaggcctagtggtggtcgatgaagcccactgtatttccgactggggtcacgat
ttccgccctgattatcgccgtattcgagatctactggctgggctatcaccaaatattcct
gtgctggctactacagcaacagctaatgaccgcgtggtagaagatgtccgtgcccaacta
ggagacggcacaggtttgcttcgtggtggactagaccgtgaatccctttacctatccgtg
gtgaacctgcccaaccccaccgaacgaccagcttggcttgccacccacctcaaggatttg
actggttcgggcatcatttactgcctcaccgtatctgctgcacatgatcttgccgatgca
cttaattctgttggatggaatgttgccgcctacaccggtcgaaccgaagcaggagagcgc
gaacgtttagaacatgccttgatcaacaacgagatcaaagcactagtagcaacctctgca
ctgggaatgggctttgacaaaccagaccttggttttgttttgcacatgggcagccccagc
tcaccggtgtcttattaccagcagattggtcgcgccgggcgcggcaccgctcgtgccgat
gtcatcctgctgccaggaactgaagacaaagagatctgggagtactttgcatcagtatcg
ttcccacgcgaagaggtagtccgccaactgctttcggtgttaaccgatgaggcgcaatcc
actgtcaaattggaatcacaagtagatctttcccgatcacgccttgaacaagtacttaaa
gtgctagacgtagatggcgcagtcaaacgtgtacgtggcggatgggtctccaccgggcaa
gagtggatctacgatgcggaacgctacgcagggcttgaacaagcaaggaaaattgaacag
caaagcatggtgaactaccagaacaccattgagtgccgcatgctgtacctccgcaaagaa
ctagacgatgtggaggcaactactccgtgcgggcgctgtgacaattgcacgggcaaaacg
tgggggctcgacaccgatgcctcgatcactttgaaagtggaccaacagcttcaaacaccc
ggagtgaaaatagccccacgaaaaatgtggccgactggcattagtgtcagaggaaaaatc
gcagggctagaagaaggacgagcactgggacgactcaatgacattgcccgtggacctgca
ctaaaggccctgctggacagcggagcttattctgatgatccatggatggcacgcatcatc
gaagtgctgaaaaactggggttggaccaaccggcctgccaacgtggtcgcgctcggcaat
accaactttggatcaactgagatgatcatccaggtagctcaatcaatcgcagcggtggga
cgaatgaactttgcgggtgtacttccagtcctgcctggtgctgaagaagtcatggctcag
aattccgcataccgagtagaagccctattgaaacaatgggactggtcgaaaggcttgcaa
ctagttcccggtcccattttgctggtgacagaccttattgatactggctggtcggtgaca
gttgcaggaaatggcattgcgcagcggacctcagagaaggtgctgccgttcgctttagcg
agtaggggatag
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