Corynebacterium glutamicum R: cgR_2890
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Entry
cgR_2890 CDS
T00501
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cgt
Corynebacterium glutamicum R
Brite
KEGG Orthology (KO) [BR:
cgt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cgt03016
]
cgR_2890
Enzymes [BR:
cgt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
cgR_2890
Transfer RNA biogenesis [BR:
cgt03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
cgR_2890
Prokaryotic type
tRNA splicing ligases
cgR_2890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
BAF55910
UniProt:
A0AB72VEE7
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All DBs
Position
3206205..3207356
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AA seq
383 aa
AA seq
DB search
MNHVVNFASHLEDAALKQAEATATMPFIYPHVALMPDAHFGLGSSVGTVFGTKGAIIPAA
VGVDIGCGMIGVCTNYTASDLEGRDLVTLRDYIERVIPLSPGNYNSTTLKETAKVKVAEL
EELAERDGVDLSHSPTWKRQLGSLGGGNHFIELCLDELDRVWMFLHSGSRGVGNKIAQKH
IKIAQAECKNEELPDKDLAYLTEGTEEFESYIKELNWAQRFAFLNREEMMDRFARELGFF
VEKQLEEVERINCHHNYTVREEHYGETIWLTRKGAVLADEGTPALIPGSMGTASYVVSGK
GNAEALRSAPHGAGRRMSRNQAKKRFSTADLDSRMAGIVYRPGKEWIDEIPDAYKDIDQV
MADAADLVTIRHKLRQIVNVKGT
NT seq
1152 nt
NT seq
+upstream
nt +downstream
nt
atgaatcatgttgttaattttgcttcacatttggaagacgcagccctgaagcaagccgaa
gctactgccaccatgccgtttatttacccgcatgtggcgttgatgcctgatgctcacttt
gggttgggttcatcggtgggaacggtgttcggcaccaagggtgcgatcattccggcggct
gtgggtgtggatataggttgcggaatgataggagtgtgtaccaattacacggcctctgac
ctggagggacgtgatttggtgacgcttcgggattacatcgagcgggtgattccgttgtct
cctggaaattacaattccaccaccttgaaggaaaccgcgaaggtgaaggtcgcggagttg
gaggagctcgcggagcgcgatggtgtggatttgtcgcactctccgacgtggaagcgccag
ttgggttcgcttggtggaggtaatcacttcattgagttgtgtcttgatgagttggatcgg
gtgtggatgtttttgcactctggttcccgtggtgtgggtaataaaattgcgcagaagcac
atcaagatcgcgcaggctgagtgtaagaatgaggagcttcccgataaggatcttgcgtac
ttgaccgaggggactgaggagtttgagtcttacatcaaggaactgaattgggcgcagcgt
tttgcgttcctcaacagggaagaaatgatggacagattcgcacgggagctgggttttttc
gtcgaaaagcagcttgaagaggtcgagcgcatcaactgccaccacaactacacggtccgg
gaggagcactacggcgagaccatttggctcacccgtaagggtgccgtgttggcggacgaa
ggcacgccggcgttgattccggggtcgatgggcaccgcgtcgtacgtggtcagtggcaag
ggcaacgccgaggcactgcggtcggcgccgcacggggcgggccggaggatgtcgcgcaac
caagctaaaaagcgcttctcgacggccgacctggattctcggatggcgggcattgtctac
cggcccggcaaggagtggatcgatgaaattcccgacgcttacaaagacatcgatcaggtg
atggccgatgctgccgatttggtgacaattcgccataaattgcgccagatcgtcaacgtg
aaaggcacctag
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