Corynebacterium glutamicum K051: WA5_2281
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Entry
WA5_2281 CDS
T02508
Symbol
Rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cgu
Corynebacterium glutamicum K051
Pathway
cgu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WA5_2281 (Rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgu03019
]
WA5_2281 (Rne)
03009 Ribosome biogenesis [BR:
cgu03009
]
WA5_2281 (Rne)
Enzymes [BR:
cgu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WA5_2281 (Rne)
Messenger RNA biogenesis [BR:
cgu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WA5_2281 (Rne)
Ribosome biogenesis [BR:
cgu03009
]
Prokaryotic type
rRNA processing factors
WA5_2281 (Rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
Cytidylate_kin
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
CCH25501
LinkDB
All DBs
Position
complement(2504828..2507893)
Genome browser
AA seq
1021 aa
AA seq
DB search
MPNNKAVEAEISPSAVLAAEFDRDSLSEKTRVHQLAKRLGMVSKDVVVALDGIGLVKVAQ
SNLSKEEVEKLLDALSQPVLNAAPAAVPDVEPVEKIRRRVEKNVENEIHQIEEKVERELA
AVAQPTDFEAAAREEATAELLEDIVPEITPAPVEASVYTPIFVAPAVVPTENVQDTDDEQ
VRERTARKRRGRRGTGRGRGAEAETVTEVSEEASTSEVEEVNEPIGIKGSTRLEAQRRRR
TEMREENKKRRHVVSTQEFMERRESMERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFV
TSDAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRRIEQ
ALKAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERKRLKE
ILGRVVPAQGGTIIRTAAEGVSEENIAADVNRLHTLWEQIKERTAEEKKSRGSKPITMYE
EPDMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFNRADFDGKDAF
EAFDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKGGGNLEETVTLNNI
EAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDRTRHQVSEVTSLGL
VQMTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTVDERVEAKAEERSRRHQRSNSTN
KAAAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDSDLDDVVNDKLDEPERILAES
TVEPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEEDPDEPSGSSYVSDFEAEPIAPV
VEKAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRSDHAPKPEDFAPVVEEVAETPVK
TPARKAPRRNRPSELSSGAPSSAPSTRNRRRAVRRQLVEAPETVVEIAPEAAPEQVAEPQ
VEFDQPDNRRKRRRAVRVTAAPVEKKVASTSNARAPKKEPQAASTTNPGRRRRATRRGPR
S
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaataacaaggcagtagaagcagaaatctctccctcggctgtgctggccgcggaa
tttgatcgagattcattgagcgaaaaaacccgcgtacatcaactggccaaacgacttgga
atggtttccaaggacgtcgttgttgcgctcgatggcatcggcctggtcaaggttgcgcag
tcaaacctgagcaaagaagaagtagaaaagcttctcgacgccctgtctcagcccgtactc
aacgctgccccagctgccgtccccgacgttgaaccggtggagaagattcgtcgacgcgtt
gagaagaatgtggaaaatgaaatccaccaaatcgaagaaaaagtagagcgcgaactcgcg
gcagtcgcgcaacctactgacttcgaggcggcagcccgcgaagaagccactgcagaactg
ctggaagatatcgtcccagagatcaccccggcgccggtggaagcatctgtgtacacgccg
atctttgtggcacctgcagttgtacctactgaaaacgtccaagacaccgacgatgaacag
gtccgcgaacgcacggcgcggaagcgccgtgggcgtcgtggcaccggccgcggacgtgga
gctgaagctgaaaccgtcaccgaagtgagtgaggaggcgtcgacaagcgaagtagaagag
gtaaacgagccaatcggaattaagggctccactcgcttggaggcgcaacgccgccgtcgc
acggaaatgcgcgaagaaaacaaaaaacgccgccatgtggtcagcacccaggagttcatg
gaacgccgtgaatcgatggaacgtcgcatgattgtgcgcgagcgccaacgccacgatcac
ccaggtctggtcactcaggttggtgtgctggaagacgatcagctggttgagcagtttgtt
acctctgatgcgcagatgtctatggtgggcaatatttatctggggcgcgttcaaaatgtg
ctgccaagcatggaagctgccttcattgacattggaaaaggtcgcaacggtgtgttgtat
gccggcgaagtcgactggaaagctgctggacttggcggacgtggacgtcgcattgagcag
gcgctgaaagccggcgaccaggttctcgtccaggtctccaaggatccattgggccataag
ggtgcgcgtttgaccacccaaatttccctggcgggacgttacctggtgtacgttccaggt
ggtcgcagcgctggcatttcccgcaaactgcctggacctgagcgcaagcgtctgaaggaa
atccttggccgcgttgtcccagcgcagggtggaaccatcatccgaactgctgctgaaggt
gtgtcggaagaaaacatcgcagctgacgtgaaccgtctgcacaccctgtgggagcagatc
aaggaacgcactgcggaggaaaagaagtcccgcggttctaagccgatcaccatgtatgaa
gagccagacatgctggtgaaggtgatccgtgacctcttcaatgaagatttcacctcactg
atcgttgacggcgaccgtgcctggaacaccgtgcgtgcctacatccaatcagtcgctcct
gatttggtgtcccgcgtggaacacttcaatcgcgcagactttgacggcaaggatgctttc
gaagcattcgacctgaacacccagcttgaggaagcgctgtcccgaaaggtgaacctgcca
tcgggtggatcgctgatcatcgaccgcaccgaagccatgacggtgatcgatgtgaacacc
ggacgctacaccggcaagggtggtggcaacttggaagaaaccgtcacgctcaacaacatt
gaagctgccgaagaaatcgtgcgccaaatgcgcctgcgggatctcggtggcatgatcgtt
gtcgacttcatcgatatggtgctgccagaaaaccaagaattggtcctgcgccgactcaat
gaagcgctagaaaacgatcgcacccgccaccaagtctctgaggtaacctcactgggactt
gttcagatgacccgcaaacgcatcggcgcgggcctgctggaaaccttctcttcaccgtgt
gagcactgtgaaggccgaggcatcatcgttcatgttgatccagtagacaccgttgacgag
cgcgttgaggcgaaagcggaagagcgtagccgtcgtcaccagcgttccaatagcactaac
aaggcagctgcggagcacccgatggttgttgccatgcgtgatctcgtggaaagcgatgaa
cacgatctggatcaagaatttgaggaactcgctgcatcagtgatcgtcctcgatgactcc
gatctagatgatgtggtcaacgacaagctcgacgagcctgagcgcattcttgctgaatcc
accgtggaaccagaggaaggaccacgcaggagggcccgccgtcaacgtcaggaatctgct
gcggatgatattgccgcgattgcagctgctgccgtggacattgcttctgaagaagaccct
gatgagccttcgggatcgtcgtatgtgtctgactttgaggcagagcctattgcacctgta
gttgagaaggctgctgaacctgtggctgagccaaccgctgattatgaaaaggcacgtgcc
gaatttgaggcaagcccacgcaggcgccgcaagactcgtggcaattcacgttcggatcat
gctccaaagccagaggatttcgcacctgtagttgaagaggttgctgagactccagtgaag
acacctgcgcggaaggctccacgccgtaaccgtccaagtgagctcagttccggtgcgccg
tcctctgcaccatcgaccaggaaccgtcgccgcgcagtgcgccgtcaactggtggaagct
cctgagaccgtcgttgagatagcacctgaagcagcaccagaacaggttgcagagcctcag
gttgaattcgaccagccagacaaccgccgaaagcgtcgtcgtgctgtgcgcgtgacagcg
gcgccggtggagaagaaggtggcgtcgacaagcaatgcgcgggcgccgaagaaggaacct
caggcggcgagcaccaccaacccaggccgccgtaggcgggctacccgacgaggcccacga
agctag
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