Candidatus Campbellbacteria bacterium GW2011_OD1_34_28: UR58_C0001G0013
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Entry
UR58_C0001G0013 CDS
T04488
Name
(GenBank) formamidopyrimidine-DNA glycosylase, formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cgw
Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
Pathway
cgw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cgw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
UR58_C0001G0013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgw03400
]
UR58_C0001G0013
Enzymes [BR:
cgw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
UR58_C0001G0013
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
UR58_C0001G0013
DNA repair and recombination proteins [BR:
cgw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
UR58_C0001G0013
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
Ribosomal_S13
NFACT_N
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AKM83730
LinkDB
All DBs
Position
complement(13776..14636)
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AA seq
286 aa
AA seq
DB search
MPELPEVQTIVNDLNRKIVGEKIADFESIWKKNVRPSFIKFKKEIVGAKVIGVRRIGKQI
IIDLDNSNSVLIHLKMSGHLLFKQKKTGSDPVQKKYFEERVNQYIRHKFVFESGDILDFS
DLRKFGWLGVVKTEDVENTKEIQKLGIDALGSSFTLKKFKEILNKKQKSTIGVLLLDQSL
IAGVGNIYRSEILFSAGVNPKRKVSSLKNSEIERIFDSIKNILKKAVKMRGTSDSDYRDT
EGKSGKFQNELRVYRREGKLCKLCDTKIIREKIGQRSIFYCPVCQK
NT seq
861 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattacccgaagtacaaacaatcgtaaatgatttaaatagaaaaattgttggc
gagaaaattgccgattttgaaagtatctggaaaaaaaatgttcgacctagttttataaaa
tttaaaaaagaaattgtgggtgcaaaagtaatcggagtgaggagaatagggaaacagata
attatagacttggataacagtaattctgttttgattcatttaaaaatgtctggtcacctt
ttgtttaaacaaaaaaagactgggtccgacccagtccaaaaaaagtattttgaggaaaga
gtaaaccaatatataaggcataagtttgtttttgaaagcggagatattttagatttttca
gatttacgaaaatttggctggttgggtgtagtaaaaacagaggatgtcgaaaatacaaaa
gaaattcaaaaattaggcatagacgctctgggttcttcttttactttaaaaaaatttaaa
gaaattttaaataaaaaacaaaaaagcacaataggtgttttgcttttggatcaaagcctg
attgcgggagttggaaatatttatagaagtgaaattttgttttcagctggggtaaatcca
aaaagaaaagtttctagtttgaaaaacagtgagattgaaagaatttttgattcaataaaa
aatattttaaaaaaagcggtaaaaatgcgagggacatccgattcggattatagggacacc
gagggaaagtctggaaaatttcaaaatgaattgagggtttaccgtagagaagggaaactt
tgcaagctttgtgatactaaaataattagagaaaaaatagggcagagaagtattttttat
tgtcctgtttgtcagaaataa
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