Candidatus Campbellbacteria bacterium GW2011_OD1_34_28: UR58_C0001G0449
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Entry
UR58_C0001G0449 CDS
T04488
Symbol
rnjA
Name
(GenBank) ribonuclease j1, ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
cgw
Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
Pathway
cgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UR58_C0001G0449 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgw03019
]
UR58_C0001G0449 (rnjA)
Messenger RNA biogenesis [BR:
cgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
UR58_C0001G0449 (rnjA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AKM84166
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Position
complement(472267..474123)
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AA seq
618 aa
AA seq
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MIKENKTVRTSPVKKNPTDGNTERKKTANTGTGNRKNFGRNSQRNSENHSPKTSEVKVPP
IGKETIRVIPLGGAEEVGQNMIIVEYEDDILIFDCGFQFVSEENPGIDYIIPNTKYLEAN
KHKIRALILTHGHLDHIAAIPYIIDKIGNPPIYARNLTAIMVQKRAEEFPNLPKPDLRIV
NPKEKLKFGNLHVKFIEVTHSIPDSMGVSVETPFGNVVITGDLKLEHENGIPSEKEERNW
GEIGKDNNILLIADSTNVEKPGFSIPEKQIMDNLENIIKNVNGRIIIGTFASQFERMIQI
IQIAEKYNKKVITEGRSIKTNIEIAKLAGLLNPKQDTLVQPKDIGNYPPDRILVLATGAQ
GEEFAALMRMAQKKNKFIQLNKRDTIILSSSVVPGNELSVRKLKDNLYRHDVKIISYQVS
DVHATGHGNAGELAWINTMVNARFFVPGYGHHSMLKVHAELARSIGMKDENIVVPDNGSV
IEIRDKGTKIEVLKQKAPSNIVMVDGFSVGDIQEVVIRDRQTLAQDGIFVVIATIDLGTG
KLRKSPDIISRGFVYLRESQDLLSQARKIVKKTAEDNAVGMKPINFELIKKELSDGIGRF
LLKKTNKRPIIIPVVLGV
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgattaaagaaaacaaaacagtaagaacaagtcctgtcaaaaaaaatccaacagatgga
aatactgaaagaaaaaaaaccgccaataccggtacaggcaacagaaaaaactttggaaga
aattctcaaagaaattctgaaaaccattctcctaaaacatcagaggtaaaagttcctcct
attggaaaagagactattagagtaatacctttgggaggagccgaagaagtaggacaaaat
atgatcatcgttgaatacgaggatgatattttgatttttgattgtggttttcaatttgtg
tccgaagaaaatcccggaattgattatatcattccaaacacaaaatatttggaggcaaac
aaacacaagatccgagctttgattttgacacacggacacttggatcacattgctgccatc
ccttatatcatagacaaaattggaaaccctccaatctacgccagaaatcttacagcaata
atggtacaaaaaagagcggaagaatttcccaatttaccaaaaccagatttaagaattgtt
aatccaaaagaaaaattaaaattcggcaatcttcatgttaaatttattgaagtgactcac
tctattcccgactcgatgggagtgtctgttgagacaccttttggaaatgtggtgatcaca
ggagacttaaaacttgagcacgagaacggaattccttctgaaaaagaagaaagaaattgg
ggagagattggaaaggacaacaatattcttcttatcgctgattcaaccaatgttgaaaaa
ccaggattctctattccagaaaaacaaataatggacaatttggaaaacattataaaaaat
gttaacggaagaattattattggtacttttgcctctcagtttgaaagaatgattcaaatt
attcaaattgcagaaaaatacaataaaaaagttattacggagggaagaagcatcaaaaca
aacattgagattgcaaaattagcaggtctacttaatccaaaacaagatactcttgttcaa
ccaaaagatattggcaattaccctcctgacagaatattggttttggcgacaggagcacaa
ggcgaagaatttgccgctcttatgagaatggcacaaaagaaaaataaatttatccaacta
aataaaagagatacaattattctttcttcatctgttgttccgggaaatgaattaagtgta
cgaaaattgaaagataatctttatagacacgatgtaaaaatcatcagttatcaagtatcc
gacgttcacgcgacaggtcacggaaatgcaggagaattggcttggataaatacaatggtt
aacgcaagattttttgtacctggatatggacatcactcgatgttaaaagttcatgctgaa
ttggcaagatcaatcggaatgaaggacgaaaatattgttgtgcctgataatggttctgtt
attgagatacgagacaaaggaacaaaaatagaagttctaaaacaaaaagccccttcaaac
attgttatggtagatggtttttccgttggagatattcaggaagtggttatcagagacaga
caaactttggcgcaagacggaatctttgtggtaattgctacgattgatttaggcacaggg
aaacttcgaaagtcaccagatataatttctagaggatttgtgtatttaagagaatcacaa
gatcttctttcacaagccagaaaaatcgtaaagaaaacagcagaagacaatgctgtcgga
atgaaaccaatcaattttgaattgattaaaaaagaattaagcgatggaatcggaagattc
ttgttaaagaaaacaaacaaaagaccaattattattcctgtagttttgggagtgtaa
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