Candidatus Campbellbacteria bacterium GW2011_OD1_34_28: UR58_C0001G0668
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Entry
UR58_C0001G0668 CDS
T04488
Name
(GenBank) DEAD/DEAH box helicase, ATP-dependent RNA helicase RhlE
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cgw
Candidatus Campbellbacteria bacterium GW2011_OD1_34_28
Pathway
cgw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
UR58_C0001G0668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgw03019
]
UR58_C0001G0668
03009 Ribosome biogenesis [BR:
cgw03009
]
UR58_C0001G0668
Enzymes [BR:
cgw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
UR58_C0001G0668
Messenger RNA biogenesis [BR:
cgw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
UR58_C0001G0668
Ribosome biogenesis [BR:
cgw03009
]
Prokaryotic type
rRNA helicases
UR58_C0001G0668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
ERCC3_RAD25_C
AAA_30
CMS1
Flavi_DEAD
Cas3-like_C_2
PhoH
Motif
Other DBs
NCBI-ProteinID:
AKM84385
LinkDB
All DBs
Position
676759..677988
Genome browser
AA seq
409 aa
AA seq
DB search
MFRKRNVQRKSSGNSSSANKNFRGQGKRFSKPSRSRKSRSGQSQFSDVSKFINKAVPEKN
VKPYTPKNSFADFLIDENLKRNILKTGYKHPTPIQDQAIPHVLNGSDIVGIANTGTGKTA
AFIIPLLDKVIRNRKQNIIIIAPTRELAIQINQELVKFAFGLKIFSVCAVGGMPIFRQIS
DLRRNYNFIIGTPGRVKDLVDRGHIPLEQFQTIVLDESDRMLDMGFINDMRFLMSAMPEN
HQTLFFSATLSDDIKNIINNFLTDPISISVRVNDTASSIDQDVVYVKNEVKLDLLHDLLI
QPEFNKVLIFGKTKLGVEKLSERLSGRGLKVKSIHGNKNHTQRQHALKLFKENTVNILVA
TDVAARGLDIPNISHVINYELPSTYEDYIHRIGRTGRGGKAGKALTFIG
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtttagaaaaagaaatgtccagagaaaaagctctggcaatagttcaagtgcaaataaa
aattttagaggacaaggaaaacgatttagtaaaccaagtcgttctagaaaatctcgttca
ggacaaagccaatttagtgatgtatcaaaattcatcaacaaggccgttccagaaaaaaat
gtaaaaccttacacaccaaaaaactcttttgctgattttttgattgacgaaaatttgaaa
agaaatattttgaaaacaggttacaaacacccaacaccaattcaagaccaagctatcccc
cacgttttaaatggttctgatattgtaggaatagcaaacacaggaactggaaaaaccgca
gcttttattattcctcttttggacaaagtaatccgaaatagaaaacaaaatataataata
attgctccaacaagagaattagcaatccaaatcaatcaagaattggtaaaatttgctttt
ggattaaaaatattttctgtatgtgcggtaggaggaatgcctattttcagacaaataagt
gatttgcgtagaaattataattttataatcggaactccaggtagagtaaaggatctagtt
gatagaggtcatataccattggaacaattccaaacaattgtgctagacgaatcagatcgt
atgcttgatatgggatttatcaatgatatgcgttttttgatgtcagcaatgcctgaaaat
caccagactcttttcttctctgcaacattgtctgatgatatcaaaaatatcattaacaat
ttcttgacagaccctataagtatttctgttcgagtaaatgataccgccagcagtatagac
caagatgttgtctatgtaaaaaatgaggttaaattggatctcttgcacgatttgttgatc
caaccagaatttaacaaagttttgatttttggaaaaacaaaacttggagtagaaaaattg
tccgagcgtctttctggtcgtggattaaaagtaaaatcaattcacggaaacaaaaatcac
acacaacgccaacatgcgttaaaattgtttaaagaaaatacggtaaacattttggtggcg
acagatgtagctgctcgtggactggatatcccaaatatcagtcacgttatcaactacgaa
ctcccttctacttatgaggactatatccaccgtatcggccgtactggtcgtggtggaaaa
gcaggaaaagctttgacttttattgggtaa
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