Corynebacterium glutamicum B253: SB89_04720
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Entry
SB89_04720 CDS
T03668
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cgx
Corynebacterium glutamicum B253
Pathway
cgx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB89_04720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgx03019
]
SB89_04720
03400 DNA repair and recombination proteins [BR:
cgx03400
]
SB89_04720
Enzymes [BR:
cgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SB89_04720
Messenger RNA biogenesis [BR:
cgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SB89_04720
DNA repair and recombination proteins [BR:
cgx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SB89_04720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
HTH_Cmi2_C
IstB_IS21
TrmB
Motif
Other DBs
NCBI-ProteinID:
AJE66917
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All DBs
Position
1012672..1014723
Genome browser
AA seq
683 aa
AA seq
DB search
MNATREEANNLLAGIAGPGAQLRDDQWVAIDALVNQRKRMLVVQRTGWGKSAVYFIAAKL
LRARGAGAAVIISPLLALMRNQVASAERAGIKAATLNSANMTEWETIQQQVVSGDADVLL
ISPERLNNPDFRDTILPRLAAETGLVVVDEAHCISDWGHDFRPDYRRIRDLLAGLAPNIP
VLATTATANDRVVEDVRAQLGDGTGLLRGGLDRESLYLSVVNLLNPTERPAWLATHLKEL
TGSGIIYCLTVSAAHDLADALNSVGWNVAAYTGRTEAGERERLEHALINNEIKALVATSA
LGMGFDKPDLGFVVHMGSPSSPVSYYQQIGRAGRGTARADVILLPGTEDKEIWEYFASVS
FPREEVVRQLLAVLTDEAQSTVKLESQVDLSRSRLEQVLKVLDVDGAVKRVRGGWVSTGQ
EWIYDAERYAGLEQARKIEQQSMVNYQNTTECRMLYLRKELDDVEATTPCGRCDNCTGKT
WGLDTDASITLKVDQQLQTPGVKIAPRKMWPTGISVRGKIAGLEEGRALGRLNDIARGPA
LKALLDSGAYSDDPWMARIIEVLKNWDWTNRPANVVALGNTNFGSTEMIIQVAQSIAAVG
RMNFAGVLPAAPGAEEVMAQNSAYRVEALLKQWDWSKGLQLVPGPILLVTDLIDTGWSVT
VAGNGIAQRTSEKVLPFALASRG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgaacgcaacgagggaagaagccaacaacttactagctggaatcgccggacctggcgca
cagctccgcgatgatcaatgggtagcaattgatgcattggtaaaccaacgcaaacgcatg
ctggtggtgcaaaggaccggttggggtaaatcagccgtctacttcatcgccgccaaactg
ttaagagcacgcggtgcgggcgcagccgtgattatttctccactactagccctcatgcgt
aaccaggtggcgtccgccgaacgcgccgggattaaggcagcgacactcaacagtgccaat
atgacggaatgggaaaccatccagcaacaagtcgtttcaggcgacgccgatgtgctgtta
atttcacctgaacgcctcaacaacccagactttagagacaccattttgcctcgactagca
gctgaaacaggcctagtggtggtcgatgaagcccactgtatttccgactggggtcacgat
ttccgccccgattatcgccgcatccgcgacctgttagcgggacttgcgcccaatattccc
gtgctagcaaccacagccaccgccaatgaccgcgtggttgaagatgtccgtgcccaacta
ggagatggcacaggtttgcttcgtggtgggctagaccgtgaatccctttacctatcagtg
gtgaacctgctcaaccccaccgaacgcccagcttggcttgccacccacctcaaagaactg
acgggttcgggcatcatttactgcctcactgtgtcagctgcacatgatcttgccgatgca
cttaattctgttggatggaatgttgccgcgtacaccggtcgaaccgaagcaggagagcgc
gaacgtttagaacatgccttgatcaacaacgagatcaaagcactagtagcaacctctgca
ctgggaatgggctttgacaaacctgaccttggatttgttgtgcacatgggcagccccagc
tcaccggtgtcttattaccagcagattggtcgcgccgggcgcggcaccgctcgtgccgat
gtcatcctgctgccaggaactgaagacaaagagatctgggagtactttgcatcagtatcg
ttcccacgcgaagaggtagtccgccaactgcttgcggtgttaaccgatgaggcgcaatcc
actgtcaaattggaatcacaagtagatctttcccgatcacgccttgaacaagtacttaaa
gtgctagacgtagatggcgcagtcaaacgtgtacgtggcggatgggtctccaccgggcaa
gagtggatctacgatgcggaacgctacgcaggacttgaacaagcaaggaaaattgaacag
caaagcatggtgaactaccagaacaccactgagtgccgcatgctgtacctccgcaaagaa
ctagacgatgtggaggcaactactccgtgcgggcgctgcgacaattgcacgggcaaaacg
tgggggctcgacaccgatgcctcgatcactttgaaagtggaccaacagcttcaaacaccc
ggagtgaaaatagccccacgaaaaatgtggccgactggcattagtgtcagaggaaaaatc
gcagggctagaagaaggacgagcactgggacgactcaatgacattgcccgtggacctgca
ctaaaggccctgctggacagcggagcttattctgatgatccatggatggcacgcatcatc
gaagtgctgaaaaactgggattggaccaaccggcctgccaacgtggtcgctctcggcaat
accaactttggatcaactgagatgatcatccaggtagctcaatcaatcgcagcggtggga
cgaatgaactttgcgggtgtacttcccgccgcgccgggtgctgaagaagtcatggctcag
aattccgcataccgagtagaagccctattgaaacaatgggactggtcgaaaggcttgcaa
ctagttcccggtcctattttgctggtgacagaccttattgatactggctggtcggtgaca
gttgcaggaaatggcattgcgcagcggacctcagagaaggtgctgccgttcgctttagcg
agtaggggatag
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