Corynebacterium glutamicum B253: SB89_08765
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Entry
SB89_08765 CDS
T03668
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
cgx
Corynebacterium glutamicum B253
Brite
KEGG Orthology (KO) [BR:
cgx00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgx03019
]
SB89_08765
Enzymes [BR:
cgx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
SB89_08765
Messenger RNA biogenesis [BR:
cgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
SB89_08765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
NACHT
ResIII
AAA_16
AAA_11
AAA_23
DUF3772
AAA_25
PhoH
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
AJE67624
LinkDB
All DBs
Position
1872974..1876882
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AA seq
1302 aa
AA seq
DB search
MTTSETAPSKASLYELLEGVSLSDERMFRRRLSKARAPKALGAIKADIDKARLLIDEKSQ
LIPSITYPENLPVNSRRDDIAEAIRDNQVVIIAGETGSGKTTQIPKICLDLGRGRRGLIG
HTQPRRLAARTVAERIADELGQDIGDSVGYAIRFDDRVSSHTSVKLMTDGILLAEMQRDR
FLNAYDTIIIDEAHERSLNIDFILGYLRQLLPKRPDLKVIITSATIDPERFAEHFADASG
KPAPIIEVSGRTFPVEIRYRQLEVLDGDKIIDTDPLDGLCSALEELMTEGDGDILCFFAG
ERDIRDAMEAIEARRWKGVEVTPLFGRLSNQEQHRVFSPHSGRRIVLSTNIAETSLTVPG
IHYVVDTGTARISRYSVRTKVQRLPIENISQASANQRSGRCGRVADGIAIRLYSEDDFNS
RPEFTDPEILRTNLASVILRMASLRLGDINDFPFVQAPEQRSIRDGILLLHELGALTDDT
QADGSPQLTQIGKDLANIPVDPRMARMLVEANTLGCLHSVMVIVSALTIQDVRERPLEFQ
AQADQAHARFKDTTSDFLGFLKLWEYIADQRDQSSGNSFRKQMKKEFLHYMRIREWWDLV
RQLEQIGQQLGWAKKEQVAGTASPDIIHQSLLTGLLSQIGSRDGESKEFTGARGTKFLVF
PGSALTKKPPQFIMAGQLVETSRLWARDVAKIEPEWVEKAAGPLLKHQYSEPYWSSKRGA
AMVHRKSTLYGVTIVADKVVPYHTVDPVAARDMFIRHALIEGDWSTHHRFYHDNVAKLEA
IGELEAKARRRDIVVDEDTLFDFYDAKLPSNATTTRNFDSWWKKTSRVTPDLLDFDPDSL
INEDADGVNEEAFPDKWIKGSLIFDLSYHFEPGHRDDGVTVLIPIPVLGGLDTEGFDWLV
PGLRLDLVTELIRTMPKALRRTVVPAPDFAERALPLLRPYMTPLTTQLADALHTLGGQGI
NASDFDPAKLPDHLRISYAAVDRRGKIIDRDRDLEALKKRRANQIRASVSSVAKASEQDE
TTQWTTDTLGTIDEEIETTVDGQSVTAYPALVVTPTGVSVKVMPTKAAADASMITATLTL
LMREIEVSTKQMVKGLPLQQRVAVDNYPHGGAEGLVSDARIAAIRDLMFEHGGAVRSPEE
FDVLLAKVKPETPGVVRRTVVELAPALVHYASVVSELESWSGPAIDDMTAQLDFLLPKQA
ISIHGISRLRHLPRYLQALTIRLEEMNQNPDRDADRQDEVNFVEEQLEKQLSKLPAARAN
TKEAKDIAWQIQELRVSLFAQRLGTPRPVSAQRIQKAIAKLR
NT seq
3909 nt
NT seq
+upstream
nt +downstream
nt
atgactacttctgaaactgccccatcaaaggcttccctgtatgaacttttagagggcgta
tccctctccgacgagcgcatgtttaggcgccgactgtccaaagctcgcgcgcccaaggcg
cttggtgcgattaaggctgatatcgataaggcacgcttgcttatcgacgaaaagagccag
ttaattccgtctatcacctacccagaaaaccttccggtgaattcccggcgcgatgatatc
gccgaggctatccgtgataatcaggtggttattatcgccggtgagactggttcgggtaag
acgactcagattcctaagatttgtttggacctaggccgtggccggcgtgggctcattggc
cacacacagccacgtcgattagcagctaggaccgtcgccgagcgcatcgccgatgaattg
gggcaagacatcggcgactcggtgggttatgcgattcgttttgatgatcgagtttcctcg
catacatccgtgaagttgatgacggatggtattttgcttgctgaaatgcagcgggatcgt
ttcctcaatgcgtatgacaccatcatcatcgatgaggcgcatgagcgttccctcaacatt
gacttcattttgggttatttgcgccagttgttgcctaagcgccctgatcttaaagtcatt
attacctccgcaacgattgaccctgagcgtttcgcggagcactttgctgatgcttctgga
aaaccagcaccaattatcgaggtctccggccgcaccttcccggtagagatccgttatcgc
cagcttgaggtactagacggcgataaaattatcgataccgatcccctcgacggcttgtgt
tctgctttggaagagctcatgaccgaaggcgacggcgatatcctctgcttcttcgccggt
gagcgtgatatccgcgatgccatggaggcaatcgaggcccgacgctggaaaggtgtggaa
gtcactcccctgtttggccgcctgtccaaccaggagcagcaccgtgtatttagcccgcac
tctggtcgacgcattgtgctttccaccaatatcgcagagacatccctgacggttccgggc
attcactacgtggttgataccggtacggcgcgtatctctcgttattcagtgcgcaccaag
gtgcagcgccttccgattgagaacatttcccaggccagcgcaaaccagcgttctggtcgt
tgtggtcgtgtcgcagacggtattgcgattcgtttgtattccgaagatgatttcaactct
cgcccagagttcaccgatccggaaattctgcgcaccaacttggcgagcgttattttgcgc
atggcgtcgctgcgtcttggcgatattaatgatttccccttcgtccaagccccagagcaa
cgctccatcagggatggtattttgctgctccacgagttgggcgcactcaccgacgacacc
caagccgatggttcaccgcagctcacccagatcggtaaagacttagccaacatcccagtc
gatccccggatggcccgcatgctcgtagaagccaacactctaggctgcctgcattctgtc
atggtcattgtgtccgctctgacgattcaagatgttcgcgaacgccccctggaattccaa
gcccaagctgatcaagcccacgctaggttcaaggacaccacctcagatttcttaggcttt
ttgaaactgtgggagtacatcgccgatcagcgcgatcaaagcagcggcaattccttccgc
aagcagatgaaaaaagaattcctccactacatgcgtatccgcgagtggtgggatttggtg
cgccaattagagcagattggccagcaacttggttgggcaaagaaggagcaggttgcaggc
accgccagccctgacatcattcaccaatccttgctcaccggtctgctctcgcaaatcggt
tcccgtgatggtgagagcaaagaattcactggagccagaggtaccaaattcttggtcttt
cctggttctgcgctaaccaagaagccaccacagttcatcatggctggccaattggtagaa
acctcacgtttgtgggcccgcgatgtagccaagattgaaccagagtgggtggaaaaagca
gccggcccattgctcaagcaccaatactctgaaccgtattggtcctcaaagcgtggcgct
gccatggtgcaccgcaaatcaacgctctacggtgtgacaattgttgccgacaaggtagtt
ccctaccacacggttgatcccgtggctgcgcgcgatatgttcatccgccatgccctcatc
gaaggcgattggtccactcaccaccgcttctaccacgacaacgtggccaaattggaggca
atcggagaacttgaagccaaggcgcgtcgccgcgacatcgtcgtagatgaagacaccctg
ttcgatttctacgatgccaagcttcctagcaacgccaccaccacccgcaatttcgattcc
tggtggaagaagacatcacgcgtcacaccggatcttctcgatttcgatccagacagtctg
atcaacgaagacgctgacggcgttaacgaagaagccttccctgacaagtggattaaaggc
agcctgatcttcgatctcagctaccacttcgaacctggccaccgcgatgacggcgtcaca
gtcctcatccccattccagtgctgggtggacttgataccgaaggcttcgattggcttgtt
ccaggcttaaggcttgatttggtgaccgagttaatccgcaccatgcctaaggctttacga
cgcaccgttgtccctgccccggatttcgccgagcgggccttgccgttactgcgtccctac
atgacaccactgaccacccaacttgccgatgcactccataccctgggcggccaaggaatc
aacgcctctgatttcgatcctgccaaactccccgatcacctgcgcatttcctatgcagca
gtagatcgtcgtggcaagatcatcgaccgcgaccgtgacctcgaagcactaaagaaacgc
cgcgcgaaccaaatcagggcatctgtttctagcgttgctaaggcatccgaacaagatgaa
actacgcagtggaccacagataccttgggcaccatcgatgaagaaattgagaccactgtc
gatggacagtccgtcaccgcgtaccccgccttggttgtcaccccgactggcgtatccgtc
aaggtaatgcccaccaaggctgctgctgatgcctcgatgatcaccgcaacattgacactg
ttgatgcgtgagattgaagtatccacaaagcaaatggtcaagggactacccttgcaacaa
cgagtcgcagtggacaactatccccacggcggtgccgaaggactggtttctgatgcccgt
atcgccgcaatccgcgatttgatgtttgaacacggcggagctgtgcgttcaccggaagag
ttcgacgttcttctagccaaggtgaagccggaaacaccaggagttgttcgtcgaactgtc
gttgagctagccccagcattggttcactatgcatccgttgtgtcagagctggaatcctgg
tctggacctgccattgacgatatgaccgcccagttggatttcctcttgccaaagcaggcc
atcagcattcacggcatcagtaggttgaggcaccttccgaggtatctgcaggcgttgacg
attcgcctagaagagatgaaccaaaatccggatcgtgacgccgaccgtcaagatgaagtg
aacttcgttgaagagcagctggagaaacagctcagtaagctacccgctgcgcgagccaac
accaaggaagccaaggacattgcctggcagattcaggaactaagggtcagcctctttgca
cagcggttaggcactccccgacctgtatcggcgcagagaatccagaaggctattgccaag
ctgcgataa
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