Corynebacterium glutamicum B253: SB89_09000
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Entry
SB89_09000 CDS
T03668
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cgx
Corynebacterium glutamicum B253
Pathway
cgx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB89_09000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgx03019
]
SB89_09000
03016 Transfer RNA biogenesis [BR:
cgx03016
]
SB89_09000
Enzymes [BR:
cgx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
SB89_09000
Messenger RNA biogenesis [BR:
cgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
SB89_09000
Transfer RNA biogenesis [BR:
cgx03016
]
Prokaryotic type
tRNA degradation factors
SB89_09000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
RNase_PH_C
CagA
aRib
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
AJE67669
LinkDB
All DBs
Position
complement(1924347..1926608)
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AA seq
753 aa
AA seq
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MSDVKYFEDTEFGLIEAVATIDNGDFGTRTIRFETGQLARQADGAVTTYLDDDTMLLATT
TASNQPREGFDFFPLTVDVEERMYAAGRIPGSFFRREGRPSTEAILACRLIDRPLRPTFV
KGLRNEVQIVVTVMSMNPEDYYDVVAINGASAATRISGLPVSGAVGGVRMALVVDEKHPE
GQWVAFPTHAQHEQSVFEIVVAGRLVERKRGNKTFSDVAVMMVEAGASENVVNRVKDGAP
APTEKIVSDGLEAAKPFIDILCRAQEGLAQRVGNAAKEFPLFPPYTDEVYSAVERKVSKK
LASLLTLKAKQERDDATNAYMEEIEAELLPKFEASYSSAAEASKEIRAAYNAVMKAIVRR
MILTDHFRIDGRGVTDIRDLAVEVELIPRAHGSSLFERGETQILGVTTLDMLKMEQQIDS
LAPGDAKRYMHHYNFPPYSTGETGRVGSPKRREIGHGALAERAVLPVIPSREEFPYAIRQ
VSEALGSNGSTSMGSVCASTLSLYNAGVPLKAPVAGIAMGLVSGEIDGKTEYVALTDILG
AEDAFGDMDFKVAGTADFITALQLDTKLDGIPSKVLSDALEQARDARLTILNTMADVING
PDEMSKFAPRITTVKIPVAKIGELIGPKGKNINALTEETGANISIEDDGTVFISAADGAS
AEAAIEKINALANPQLPKVGERFLGTVVKTTAFGAFVSLLPGRDGLVHISKLGNGKRVEK
VDDVVKVGEKIQVEIADIDNRGKISLVPVVEED
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatgtaaagtacttcgaagacaccgaatttggcctgatcgaggccgtcgcaacc
atcgacaacggtgacttcggaacccgcaccatccgttttgaaaccggccaacttgcccgc
caggcagatggtgcagtgaccacctatctcgacgatgacacgatgctgctggcaaccacc
accgcatccaaccagccacgcgagggctttgacttcttcccactgaccgtggacgttgaa
gagcgtatgtacgcagctggtcgcatccctggctctttcttccgtcgtgagggccgccca
tccaccgaagctatcctggcttgccgtctcatcgaccgcccactgcgcccaacctttgtt
aagggcctgcgcaatgaggttcagatcgttgtcaccgtcatgtccatgaaccctgaggat
tactacgatgtcgtagcaatcaacggagcttccgcagcaacccgcatctccggacttcct
gtctccggcgctgtcggtggcgttcgcatggcactggttgttgatgaaaagcacccagaa
ggccaatgggttgcattcccaacccacgctcaacatgagcagtccgtatttgaaatcgtt
gtggctggccgcctcgtcgagcgcaagcgcggcaacaagaccttctccgacgtcgcagtg
atgatggtcgaagctggcgcttccgaaaacgttgtcaaccgtgtcaaggacggtgcacca
gcaccaaccgaaaagatcgtctccgacggccttgaagcagctaagccattcatcgacatc
ctgtgccgcgcacaggaaggtctggcacagcgcgttggaaacgcagccaaggaattccca
ctgttccctccatacaccgacgaggtgtactccgcagtggagcgcaaggtatccaagaag
ctagcttctttgctgaccctgaaggcaaagcaagagcgcgacgacgctaccaacgcctac
atggaagaaatcgaagccgaactgcttccaaagttcgaggcttcctacagctcagcagct
gaagcgtccaaggaaatccgtgcagcatacaacgctgtcatgaaggccatcgtgcgccgc
atgatcctcaccgatcacttccgcatcgacggccgcggagtcaccgacatccgtgacctg
gcagtagaagttgagctcatcccacgtgcgcacggttcctccctcttcgagcgtggcgag
acccagatcctcggtgtcaccaccctggacatgctcaagatggaacagcaaatcgactcc
ctggcaccaggcgatgcgaagcgctacatgcaccactacaacttccctccatactccacc
ggtgaaaccggtcgtgtgggctcaccaaagcgccgcgaaatcggccacggtgcacttgca
gaacgcgcagttttgccagtaatcccatcccgtgaggaattcccatacgcaatccgtcag
gtctctgaagctctgggctccaacggctccacctccatgggctctgtctgtgcatccact
ctgtccctgtacaacgctggtgttccactgaaggcacctgttgcaggtatcgccatggga
cttgtttccggtgaaatcgacggcaagaccgagtacgttgcactgaccgacatcctcggc
gcagaagacgcattcggcgacatggacttcaaggttgccggcaccgcagacttcatcacc
gcacttcagctggacaccaagctggacggcattccttccaaggtgctctccgatgcgctt
gagcaggcacgcgatgcccgactgaccatcctgaacaccatggctgatgtcatcaacgga
cctgatgagatgagcaagttcgctcctcgcatcaccaccgtgaagatcccagtggcaaag
atcggtgagctgatcggaccaaagggtaagaacatcaacgctcttaccgaagagaccggc
gcaaacatctccatcgaagatgacggcaccgtgttcatctctgcagctgacggcgcatct
gctgaagcggcgatcgaaaagatcaacgctctggcgaacccacagctgccaaaggttggc
gagcgcttcctcggaaccgtcgttaagaccaccgcattcggagcattcgtttccttgctc
ccaggccgcgacggccttgttcacatctccaagctgggtaacggcaagcgagtagaaaag
gtcgacgatgtggtgaaggttggcgagaagattcaggtcgaaatcgctgacatcgacaac
cgcggcaagatctccttggtcccagttgttgaagaggactaa
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