Corynebacterium glutamicum B253: SB89_10980
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Entry
SB89_10980 CDS
T03668
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cgx
Corynebacterium glutamicum B253
Pathway
cgx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cgx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SB89_10980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cgx03019
]
SB89_10980
03009 Ribosome biogenesis [BR:
cgx03009
]
SB89_10980
Enzymes [BR:
cgx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SB89_10980
Messenger RNA biogenesis [BR:
cgx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SB89_10980
Ribosome biogenesis [BR:
cgx03009
]
Prokaryotic type
rRNA processing factors
SB89_10980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AJE68029
LinkDB
All DBs
Position
complement(2368399..2371458)
Genome browser
AA seq
1019 aa
AA seq
DB search
MPNNKAVEAEISPSAVLAAEFDRDSLSEKTRVHQLAKRLGMVSKDVVVALDGIGLVKVAQ
SNLSKEEVEKLLDALSQPVLDAAPAAVPDVEPVEKIRRRVEKNVENEIHQIEEKVERELA
AVAQPTDFEAAAREEATAELLEDIVPEITPAPVEAPVYTPIFVAPAVVPTENVQDTDDEQ
ARERTARKRRGRRGTGRGRGAETVTEVSEEASTSEVEEVNEPIGIKGSTRLEAQRRRRTE
MREENKKRRHVVSTQEFMERRESMERRMIVRERQRHDHPGLVTQVGVLEDDQLVEQFVTS
DAQMSMVGNIYLGRVQNVLPSMEAAFIDIGKGRNGVLYAGEVDWKAAGLGGRGRRIEQAL
KAGDQVLVQVSKDPLGHKGARLTTQISLAGRYLVYVPGGRSAGISRKLPGPERKRLKEIL
GRVVPAQGGTIIRTAAEGVSEENIAADVNRLHTLWEQIKERTAKEKKSRGSKPITMYEEP
DMLVKVIRDLFNEDFTSLIVDGDRAWNTVRAYIQSVAPDLVSRVEHFDRADFDGKDAFEA
FDLNTQLEEALSRKVNLPSGGSLIIDRTEAMTVIDVNTGRYTGKGGGNLEETVTLNNIEA
AEEIVRQMRLRDLGGMIVVDFIDMVLPENQELVLRRLNEALENDRTRHQVSEVTSLGLVQ
MTRKRIGAGLLETFSSPCEHCEGRGIIVHVDPVDTVDERVEAKAEERSRRHQRSSSTKKA
AAEHPMVVAMRDLVESDEHDLDQEFEELAASVIVLDDSDLDDVVNDKLDEPERILAESTV
EPEEGPRRRARRQRQESAADDIAAIAAAAVDIASEEDPDEPSGSSYVSDLEAEPIAPVVE
KAAEPVAEPTADYEKARAEFEASPRRRRKTRGNSRSDHAPKPEDFAPVVEEVAETPVKTP
ARKAPRRNRPSELSSGAPSSAPSTRNRRRAVRRQLVEAPETVVEIAPEAAPEQVAEPQVE
FDQPDNRRKRRRAVRVTAAPVEKKVASTSNARAPKKEPQAASTTNPGRRRRATRRGPRS
NT seq
3060 nt
NT seq
+upstream
nt +downstream
nt
gtgccaaataacaaggcagtagaagcagaaatctctccctcggctgtgctggccgcggaa
tttgatcgagattcattgagcgaaaaaactcgcgtacatcaactggccaaacgacttgga
atggtttccaaggacgtcgttgttgcgctcgatggcatcggcctggtcaaggttgcgcag
tcaaacctgagcaaagaagaagtagaaaagcttctcgacgccctgtctcagcccgtactc
gacgctgccccagctgccgtccccgacgttgaaccggtggagaagattcgtcgacgcgtt
gagaagaatgtggaaaatgagatccaccaaatcgaagaaaaagtagagcgcgaactcgcg
gcagtcgcgcaacctaccgacttcgaggcggcagcccgcgaagaagccactgcagaactg
ctggaagatatcgtcccagagatcaccccggcgccggtggaagcacctgtgtacacgccg
atctttgtggctcctgcagttgtacctactgaaaacgtccaagacaccgacgatgaacag
gcccgcgaacgcacggcgcggaagcgccgtgggcgtcgtggtaccggccgcggacgtgga
gctgaaaccgtcaccgaagtgagtgaggaggcgtcgacaagcgaagtagaagaggtaaac
gagccaatcggaattaagggctccactcgcttggaggcgcaacgccgccgtcgcacggaa
atgcgcgaagaaaacaaaaaacgccgccatgtggtgagcacccaggagttcatggaacgc
cgtgaatcgatggaacgtcgcatgattgtgcgcgagcgccaacgccacgatcacccaggt
ctggtcactcaggttggtgtgctggaagacgatcagctggttgagcagtttgttacctct
gatgcgcagatgtccatggtgggcaatatttatctggggcgcgttcaaaatgtgctgcca
agcatggaagctgccttcattgacattggaaaaggtcgcaacggtgtgttgtatgccggc
gaagtcgactggaaagctgctggacttggcggacgtggacgtcgcattgagcaggcgctg
aaagccggcgaccaggttctcgtccaggtctccaaggatccattgggccataagggtgcg
cgtttgaccacccaaatttccctggcgggacgttacctggtgtacgttccaggtggtcgc
agcgctggcatttcccgcaaactgcctggacctgagcgcaagcgtctgaaggaaatcctt
ggccgcgttgtcccagcgcagggtggaaccatcatccgaactgctgctgaaggtgtgtcg
gaagaaaacatcgcagctgacgtgaaccgtctgcacaccctgtgggagcagatcaaggaa
cgcactgcgaaggaaaagaagtcccgcggttccaagccgatcaccatgtatgaagagcca
gacatgctggtgaaggtgatccgtgacctcttcaatgaagatttcacctcactgatcgtt
gacggcgaccgtgcttggaacaccgtgcgtgcctacatccaatcagtcgctcctgatttg
gtgtcccgcgtggaacacttcgatcgcgcagactttgacggcaaggatgctttcgaagca
ttcgacctgaacacccagcttgaagaagcgctgtcccgaaaggtgaacctgccatcgggt
ggatcgctgatcatcgaccgcaccgaagccatgacggtgatcgatgtgaacaccggacgc
tacaccggcaagggtggtggcaacttggaagaaaccgtcacgctcaacaacattgaagct
gccgaagaaatcgtgcgccaaatgcgcctgcgtgatctcggtggcatgatcgttgtcgac
ttcatcgatatggtgctgccagaaaaccaagaattggtcctgcgccgcctcaatgaagcg
ctagaaaacgatcgcacccgccaccaagtctctgaggtaacctcactgggacttgttcag
atgacccgcaaacgcatcggcgcgggcctgctggaaaccttctcttcaccgtgtgagcac
tgtgaaggccgaggcatcatcgttcatgttgatccagtagacaccgttgacgagcgcgtt
gaggcgaaagcggaagagcgtagccgtcgtcaccagcgttccagtagcactaagaaggca
gctgcggagcacccgatggttgttgccatgcgtgatctcgtggaaagcgatgaacacgat
ctggatcaagaatttgaggaactcgctgcatcagtgatcgtcctcgatgactccgatcta
gatgatgtggtcaacgacaagctcgacgagcctgagcgcattcttgctgaatccaccgtg
gaaccagaggaaggaccacgcaggagggcccgccgtcaacgtcaggaatctgctgcggat
gatattgccgcgattgcagctgctgccgtggacattgcttctgaagaagaccctgatgag
ccttcgggatcgtcgtatgtgtctgaccttgaggcagagcctattgcacctgtagttgag
aaggctgctgaacctgtggctgagccaaccgctgattatgaaaaggcacgtgccgaattt
gaggcaagcccacgcaggcgccgcaagactcgtggcaattcacgttcggatcatgctcca
aaaccagaggatttcgcacctgtggttgaagaggttgctgagactccagtgaagacacct
gcgcggaaggctccacgccgtaaccgtccaagtgagctcagttccggtgcgccgtcctct
gcaccatcgaccaggaaccgtcgccgcgcagtgcgccgtcaactggtggaagctcctgag
accgtcgttgagatagcacctgaagcagcaccagaacaggttgcagagcctcaggttgaa
ttcgaccagccagacaaccgccgaaagcgtcgtcgtgctgtgcgcgtgacagcggcgccg
gtggagaagaaggtggcgtcgacaagcaatgcgcgggcgccgaagaaggaacctcaggcg
gcgagcaccaccaacccaggccgccgtaggcgggctacccgacgaggcccacgaagctag
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