Corynebacterium glyciniphilum: CGLY_05110
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Entry
CGLY_05110 CDS
T03073
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgy
Corynebacterium glyciniphilum
Pathway
cgy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CGLY_05110 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgy03400
]
CGLY_05110 (mfd)
Enzymes [BR:
cgy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CGLY_05110 (mfd)
DNA repair and recombination proteins [BR:
cgy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CGLY_05110 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
AHW63470
UniProt:
X5E7Q9
LinkDB
All DBs
Position
1112139..1115864
Genome browser
AA seq
1241 aa
AA seq
DB search
MSVTHTTPTPPLSGVLRSVASDPKLRGMVTHVGDLRLHLQGPEAAWPFAVGALAQQAPVL
LVTATGRQAEDLTAQLTAMLGDTVAMVPSWETLPHERLSPGVETVSQRRQALYRLAHGEV
QVLVAPTRSVVQPVMAGLGDVEPVRLVEGEELDFADVQKRLVEFGYAHSDVVGRRGEFAT
RGGILDIFPATAEMPVRVEFWGDEVSEVRAFSVGDQRTIPEAVTQAVSVHPVRELLITDD
VARRAESLARENAGNPELAEAFDKISQHTPVQGMESLIPLLYDGPMQTLPELMPDGAHTV
VLAPAAVQRRAEDLIATGREFLAAGWEVAAMGGAAPVDVTAIADSSEAGVQDVDRAGYRS
LASLQKTQDALGVPWWTLSPTGVADWDDGDDGDAEPLLLDFDVAPAPHGEMEAIGQLMST
IRRRVEDGGRVAYAAPSPTIVARMLRRFREAGIAAEAVGVDLDGITGQGRMRRSKRTPDE
VPATGTVSIYQAAAHAGLDTRELLFVTESDVTGNRVEASATGRRKPAKKRNRVDPLALAP
GDLVVHDQHGIGKFVKMTERTIGKGPDASRREYLVLEYAPSKRGGPGDQLYVPMDQLDLL
SRYVGGEKPSLSKMGGSDWKNTKKKARGAVREIAGELVQLYAARQAAPGYAFDPDSPWQR
QMEEAFPFTETEDQFNAIEAVKGDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAVQSGKQ
VALLVPTTLLAQQHYRTFIDRMQDFPTQIRELSRFTSPKESTEVFEGMADGTVDIVIGTH
RLLGTGIRWKNLGLIVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSMAGIR
EMSTILTPPQDRHPVLTYVGSQDEKHVAAAIRRELLRDGQVFYVHNKVKSIEDTASRIRQ
LVPEARVVVAHGQMSEEQLETTVQGFWDREFDVLVCTTIVETGLDIANANTLIVENAHHM
GLSQLHQLRGRVGRSRERAYAYFLYPKGETLTETSYDRLTTIAQNNDLGAGMAVAMKDLE
MRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFRAMADGETVDGSDTAERREIRIDLP
VDAHIPVTYIASERLRLEAYRKFAEATDDEALEQVLEELRDRYGDIPEEVQRLVVVARLR
MVCRDLDVTEVIQTGAKISFSPIALADSGQVRLKRLFPAATYRATPKTVLVPVPKEGSGM
RAVALRDLDLVQWCANVLTDLAGVPRRDVTAVAGHTEPVTR
NT seq
3726 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcacccacacaaccccgacacctccgctgtccggggtgctgcgttctgtcgcc
tccgatccgaagctgaggggcatggtcacgcacgtcggcgacctgcgtctgcacctgcag
gggccggaggcggcgtggccgttcgccgttggtgcgctggcacagcaggccccggtgctg
ctggtgacggcaacgggacgccaggcggaggacctgacggctcagctcaccgcaatgctg
ggggacacggtggcgatggtgccgtcctgggagacgttgccgcacgagcggctgtcgccg
ggggtggagacggtgtcgcagcgtcgccaggcgctgtaccgactcgcccacggcgaggtg
caggtactggtggcaccgacccggtcggtggttcagccggtgatggccggtctgggcgac
gtggagccggtgcggttggtggaaggcgaagaactcgacttcgccgacgtgcagaaacgt
ctcgtggaattcggttatgcgcactccgatgtcgtgggtcgacgcggggagttcgcgacc
cgcggcgggattctcgacattttcccggcgacggcggagatgccggtgcgcgtcgagttc
tggggtgacgaggtcagcgaggtccgtgcgttctcggtgggggaccagcggacgatccct
gaggcggtcacacaggcggtctccgtccatcctgtccgggagctcctgatcacggatgac
gtcgcccggcgcgcggagtccctggcgcgggagaacgcggggaacccggagctggcagag
gccttcgacaagatcagccaacacactccggtgcagggcatggagtcgttgatcccgttg
ctctacgacgggccgatgcagacactgcccgagctcatgcccgacggcgctcataccgtg
gtgctcgcaccggccgcggtgcagcggcgggccgaggacctcattgcgacggggcgggag
ttccttgccgcggggtgggaggttgcggcgatgggtggtgcggcgccggtggacgtcact
gccattgccgacagttccgaggccggggtgcaggacgtggaccgggcggggtaccggagt
ctcgcatcattgcagaagacgcaggacgctctgggggtgccgtggtggacattgtcgccg
accggcgtcgcagactgggacgacggcgatgacggcgatgctgagccgttgctgctcgat
tttgacgtcgcgccggcgccgcacggcgagatggaggccatcggccagctgatgtccacg
atccggcgtcgggtggaggacggtggcagggtggcgtacgcggcaccgtcgccgacgatc
gtggcgcggatgctgcgccggttccgggaggcagggatcgccgcggaggccgtgggcgtg
gaccttgacggcattaccgggcagggcaggatgcggcgctcgaagcgcacccctgacgag
gttcccgccaccgggacggtcagtatctaccaggctgcagcgcacgccgggctggacacc
cgggagctgctgtttgtcacggagtccgatgtcacgggcaaccgtgtcgaggccagcgcg
accggtcggcgcaagcctgcgaagaagcgcaaccgggtggacccgctggcgctggctccg
ggcgacctcgtcgtccacgaccagcacggtatcggcaagttcgtcaagatgaccgagcgc
acgatcggcaaggggccggacgcgtcccgacgcgagtacctggtgctggagtacgccccg
tcgaaacggggtggtcctggcgaccagctctacgtcccgatggaccagctggacctgttg
tcccgctatgtcggcggcgagaagccgtcgctgtcgaagatgggtgggtcggactggaag
aacaccaagaagaaggcccggggagcggtacgggagatcgcgggcgagctggtgcagctt
tacgcggcccggcaggcggcacccggttacgccttcgatccggattcgccgtggcagcgg
cagatggaggaggcgttccctttcacggagaccgaggaccagttcaacgccatcgaggcg
gtgaagggtgacatggagaagccggtgccgatggaccgggtgatcgtcggtgacgtcggc
tacggcaagaccgaggtggcggtacgtgcggcgttcaaggccgtgcagtccggtaaacag
gtcgctctgctggtgccgaccacgctgctggcgcagcagcactaccgcacgttcatcgac
cggatgcaggatttccccacacagatccgggagttgtcgcgtttcacctcgccgaaggag
tccacggaggtcttcgagggcatggccgacggcaccgtcgacatcgtgatcggcacccac
cgactgctggggaccggtatccggtggaagaacctggggctgatcgtcgtcgatgaggaa
cagcgcttcggcgtggagcacaaggaacacatcaagtcgctgcgtacccatgtcgacgtg
ctgacgatgtcagccacaccgatcccgcgcaccctggagatgtcgatggcgggcatccgt
gagatgtcgacgatcctcaccccgccgcaggaccggcacccggtgctgacctacgtcggc
tcacaggacgagaagcacgtggccgcggcgatccgtcgggagctgctgcgcgacgggcag
gtcttctacgtccacaacaaggtcaagagcatcgaggacaccgcctcgcggatccggcag
ctcgttcccgaggcgagggtggtcgttgcgcacgggcagatgagtgaggagcaactggag
accacggtgcaggggttctgggaccgggagttcgacgtgctggtgtgcacgaccatcgtg
gagaccgggctggacatcgccaacgccaacaccctgatcgtggagaatgcccaccatatg
ggcctgtcccagctgcaccagctgcgaggtcgggtcgggcggtcgcgtgagcgggcttac
gcctacttcctctacccgaagggggagacgctcacggagacgtcctatgaccggttgacc
accatcgcgcagaacaacgacctgggtgcgggtatggcggtggcgatgaaggacctggag
atgcgtggtgcgggcaacgtcctgggtgccgagcagtccggccacatcgccggggtcggg
ttcgacctctacgtccggctggtcggtgaagctgtcgaggctttccgtgcgatggcggac
ggggagacggtggatggttcggatacggcggagcgtcgggagatccgtatcgacctgccc
gtcgacgcccacattccggtgacgtacatcgccagcgagcggctgcggctggaggcctac
cgtaagttcgccgaggccaccgacgatgaggcgctggagcaggtcctcgaggaactgcgg
gaccgttacggtgacatccccgaggaggtgcagcgtcttgtggttgtcgcacgcctgcgg
atggtgtgccgggacctggacgtcactgaggtcattcagaccggggcgaagatcagtttc
tccccgatcgcgctggcggactccgggcaggtgcgtctcaagcggctgttccccgcggcg
acctaccgggcgacaccgaaaacggtgctggtcccggtgccgaaggagggatccgggatg
cgggccgtcgccctgcgtgacctcgacctcgtgcagtggtgtgccaatgtgctgaccgac
ctggcaggtgtgccgcggcgcgatgtcacagcagtggccggacacacggagccggttacc
cgctga
DBGET
integrated database retrieval system
