Chlamydia gallinacea: M787_001195
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Entry
M787_001195 CDS
T04276
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cgz
Chlamydia gallinacea
Pathway
cgz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cgz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
M787_001195
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cgz03400
]
M787_001195
Enzymes [BR:
cgz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
M787_001195
DNA repair and recombination proteins [BR:
cgz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
M787_001195
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
ERCC3_RAD25_C
DUF3638
UB2H
AAA_19
RecG_dom3_C
AAA_30
ADDB_N
Motif
Other DBs
NCBI-ProteinID:
ANG65942
UniProt:
A0A173DYE4
LinkDB
All DBs
Position
267457..270708
Genome browser
AA seq
1083 aa
AA seq
DB search
MDFNTDNLAPTLLSQLTHASTPLLIENIHSGARAFLAAQFFHQKNTSVVMVTTRSRLDDL
FEDLSAFLEVPPLEFPSSEIDLSPELVNIDAVGKRDKILYELCGKDKPVFCVTTLKALLE
KTRSPQNLASQYLDIHVGDMLDPDTMIDLCKNLGYRHTTLASDKGEFAYRGGIIDIFPLS
SPEPFRIEFWGEKIISIRPFNPSDQLSTGKTSRLSISPAIQNSGEESLEHSLLDYFLSPP
AFIFDNLTQLEDDFAEMAGTLASLPKRFLSIKEFCSRAFLSPTIFFEETTYPNAQIKKNQ
EVHIEAFHCHIATSRVAAPFIYPNEIFASEGNPLLDFLQQLHEYLPNTESPFHISIYHTN
TKSLKEAHTLIETLRHPHWQIHEKRHNLSSSFALVEQGFVAISLSEFASTKVLRRQKQRS
YASVATEEVFVPIPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVIEYADRARLYVPSD
QAYLISRYVGTSEKSPELHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTAAAFTYP
PHGEEVIKFEESFPYEETPDQLKAIEQIYNDMMSEKLMDRLICGDAGFGKTEVIMRAAVK
TVCDGHRQVIVMVPTTILATQHYETFTQRMAGLPINIAVLSRFSDNKTTKKIFEGVSNGD
IDILIGTHKLINKHLEFKNPGLLVIDEEQRFGVKVKDFLKERYPTVDCLTVSATPIPRTL
YMSLSGARDLSLITMPPLDRLPVSTFVLEYSDETLTAALRHELLRGGQAYVIHNRIESIF
RLANTIRSLIPEARIAVAHGQMSSEELAAIFQKFKDQQINILVATALIENGIDIPNANTI
LVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSSPAAKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNTSPLLFNDDVKIEFP
YNSRIPDSYIELASMRIEFYQKIGNAENPEQLTCIQEEMRDRFGPLPDEVLWLFALARIR
IFALERHITSIKGTTNALYIQQHQEKTEKLKKVLPYSLSPTPELLVSEVLESLEKAFPTQ
ASC
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggatttcaacacagataacttagctccaactcttctttctcaacttactcatgcctct
actccattattaatagaaaacatccactcgggagcacgcgcatttttagcagctcaattt
tttcatcaaaaaaatacttccgttgttatggtaacaacacgttctcgactggatgatctt
tttgaagatctctctgcatttttagaagtccctcctctagagtttccttcatcagaaatt
gatttgtctcctgagctggtcaatattgatgctgtgggcaagcgtgataaaattctttat
gaactttgtgggaaagataaacccgtattttgtgtgactacattaaaagcattattagag
aaaacacgttctcctcagaatttagcaagccaatatctagatattcacgtaggggatatg
ttagatcctgatacgatgatagatttatgtaaaaatttaggctatcgtcatacaactctt
gctagcgataaaggggaatttgcttatcgtggtgggattattgatattttccccttatct
tctcccgagccttttcgaatagaattttggggagaaaaaattatttctatacgtcccttt
aatccttcagatcaactctctacagggaaaacttctaggctctccatatctccagcaata
caaaattctggagaagagtccttagagcacagccttttagattatttcctctccccccct
gcatttattttcgacaatttaacacaattagaagatgattttgcagaaatggcaggaacg
cttgcctctctacctaaacgctttttatccattaaagaattttgttcgcgtgctttccta
tctccgacaattttttttgaagaaacaacctatcccaatgcgcaaattaaaaaaaatcaa
gaagtccatatagaggctttccattgccatattgcaacatcacgtgttgcagctcccttc
atctatcctaatgaaatctttgctagtgaaggaaatcctcttttagactttttacaacaa
ttgcatgaatatcttcctaatacagaatctccgttccatatatctatctatcatactaat
actaagtccttaaaagaagctcacacactcatagaaactctccgccatccccactggcag
attcatgaaaaacgccataatctctcatcaagctttgccttagtagaacaaggttttgtt
gctatttccttatctgagtttgcatctacaaaagttttacgaagacaaaaacagcggagt
tatgcctctgtagcgactgaagaagttttcgttcccattccaggagaaactgttgtccac
ctgcacaatggtatcgggaaattcatcggaatagaaaaaaaacccaaccatttaaatatt
gagacagattatctcgttattgagtatgcagatcgagcacgactttacgtaccttctgat
caagcgtatttaatttctcgttatgtgggaacttctgaaaaatctcctgaattgcataat
ctcaacggatctaaatggaaaagatctcgcgatctctctgaaaagtctctgattctctat
gctgaaaagcttcttcaacttgaggcgcaacgttcaacagcagcagcatttacctatccc
cctcatggagaagaagtaatcaaattcgaagaaagctttccctatgaggaaactcctgat
caattaaaagctatcgaacaaatttataacgacatgatgtcagaaaagctcatggaccgc
cttatttgtggtgatgctggattcggaaagacggaagtcattatgcgtgcggctgtaaaa
acggtttgcgatggtcatcgtcaagtaattgttatggttcctacaacaattcttgccacc
caacattatgaaacatttacccagcgtatggcgggactaccaataaacatcgctgttcta
tctcgcttttcagataacaagacaacaaaaaaaatctttgaaggcgtatctaatggagac
attgacatccttattggcacacataaacttattaataaacacttagaatttaaaaatcct
ggtttgcttgttattgatgaagaacagcgttttggtgtcaaagtaaaagatttcctaaaa
gaacgctatcccactgtagattgccttactgtatccgctacacctattcctcgaacttta
tacatgtcattatcgggagctcgtgatctttctctcatcaccatgcctcctttagatagg
cttcccgtgagtacatttgtattggaatatagtgatgaaacattaacagctgctttacgc
cacgaactactccgaggtggacaggcctatgtcattcacaatcgtattgaaagtattttt
agattggcgaacactattcgctctttaattcctgaagcgcggatcgctgtcgctcatgga
caaatgtcttccgaagaactcgccgctatttttcaaaaattcaaagatcaacaaatcaat
attcttgtagctacagcattaattgaaaatggtattgatattccaaatgctaataccatt
ttagttgaccaagcagataaattcggtatggctgacttatatcaaatgaaagggcgtgtc
ggacgatggaatcgaaaagcctattgctattttttagtatcccatttagatcggttatct
agcccagctgctaagcgcttggaagccctaaataaacaagaatatgggggaggaatgaaa
attgctctgcatgatttagaaattcgaggagcaggaaatattttgggtacagatcaatca
ggacacattagcgccataggattcaatttatattgtaaattactaaaaaaaacagtagct
gccttgaaaaacaatacatcgccgctgttattcaacgatgatgtaaaaattgaattcccc
tacaattcgcgtattcctgactcttacatagagctagcatcgatgcgcatagagttctat
caaaaaataggaaatgcggaaaacccagaacaattaacttgtatacaagaagaaatgcgt
gaccgtttcggccctcttccggatgaagttttatggctgttcgctctagctagaatacgt
atatttgctttagaacgccatattaccagtattaaaggcacaacaaatgctttatatatc
caacaacaccaagaaaaaacagaaaaacttaaaaaggtattaccttattccctatcacct
actcctgaattattagtatcagaagttttagaatctttagagaaagcattccctacacaa
gcctcttgctag
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