Campylobacter hominis: CHAB381_0372
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Entry
CHAB381_0372 CDS
T00577
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cha
Campylobacter hominis
Pathway
cha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHAB381_0372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cha03019
]
CHAB381_0372
03016 Transfer RNA biogenesis [BR:
cha03016
]
CHAB381_0372
Enzymes [BR:
cha01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CHAB381_0372
Messenger RNA biogenesis [BR:
cha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHAB381_0372
Transfer RNA biogenesis [BR:
cha03016
]
Prokaryotic type
tRNA degradation factors
CHAB381_0372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNR_1st
OB_RNR_2nd
CSD2
OB_RNB
Motif
Other DBs
NCBI-ProteinID:
ABS51696
UniProt:
A7I0D2
LinkDB
All DBs
Position
complement(340167..342092)
Genome browser
AA seq
641 aa
AA seq
DB search
MKEFLKSFNIGVSKNSLSAKEQEITRNLLNVGAISEYKGKYYQNDGFVFGKLDISSNGTG
YLSAFDDKFESDLIIENKHINGAHFGDTVLAKIISKKKARTHAKVLMCVFPAFATSVVYT
KKFGREILGVNIKTEVATMLRATQKSLKALPEFTLLKIDNLKNEIVEVLGNLNDPLVDEK
ISLAIYNKNDIFSQECELQATSFGDEVDVKMYPNRLDLQDLAFCTIDPIDAKDFDDAIYF
DEQKREIYVAIADVSEYVSEYSPIDKEAKFRGFSIYFPHKSIPMLPRNLSENICSLKPDV
PRLAYVFKISLDESLNVKNEILNEAIICSKARFNYDEIDKILNDEKVPNKQFNWILSLNK
ICEKLREKRLEKGFDFRTKELRLTLDENGLIKSTRYENDTPSHKLVEDCMLLANKAAAAR
IKHGIFRNHGTADLKKINALLEDLAVLGIDAVYESDNAKMIKKIQVQADEIGIREMVDKL
IIKAQKRAEYGEFSLGHFALGFKNYTHFTSPIRRYSDLLLHRFLKANAKKDTKFYNYLLL
NIGEICENLNILEREADKVEFDFNDRKFARFAKENLGKIFRCYIDENTTQTIARLDDKLK
GARIFIDNFTCDILTPVLVRLESSDIGTAKITGKVVKKQDV
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaatttttaaagtctttcaacataggcgtcagcaaaaattcgcttagcgcaaaa
gagcaggagattacaagaaatttgcttaatgtgggcgcaatcagcgaatataaaggaaaa
tattatcaaaatgacggatttgtgtttggaaaacttgatatttcatctaatggaaccggt
tatttaagcgcatttgacgacaaattcgaaagcgatttaataatagaaaacaaacacata
aacggtgcacattttggcgatacggttttagcgaaaattatcagtaaaaaaaaggccaga
actcatgcaaaagtgcttatgtgtgtgtttcctgcatttgcgacaagcgttgtttatact
aaaaaattcggccgagaaattttaggcgtaaatataaaaaccgaagttgcaaccatgtta
agagcgacacaaaaatcgcttaaagcattgcctgaatttactcttttaaaaattgataat
ctaaaaaatgaaatagttgaggttttaggaaatttaaatgatcctttggttgatgagaaa
atttcacttgcaatttacaataaaaacgatattttcagccaagaatgcgaactgcaagcc
acgagcttcggtgatgaagtagatgtaaaaatgtatccgaatcgccttgatttgcaagat
ttggcgttttgcacgattgacccgattgatgcgaaagattttgacgatgcaatatatttt
gatgaacaaaaacgcgaaatttatgtcgcaatagccgatgtaagtgaatatgtaagcgaa
tattctccgattgacaaagaggcgaaatttagaggattttcaatatattttccgcataaa
tcaattcctatgttgccacgaaatttaagcgaaaacatctgttctttaaaaccggatgtg
ccaaggcttgcgtatgtttttaaaatttcacttgatgaaagtttaaatgtaaaaaatgaa
attttaaacgaagctataatttgttcgaaagcaaggtttaattatgatgaaatagataaa
attttaaacgatgaaaaagttccgaacaagcaatttaattggattttgtcattaaataaa
atttgtgaaaaactgcgcgaaaaaaggcttgaaaaaggttttgatttccgcacaaaagaa
cttcgactgacacttgatgaaaacggtcttataaaaagcacgcgctacgaaaacgatacg
ccatctcacaaactggttgaggattgtatgcttttggcaaataaagcagccgctgccagg
ataaagcatgggattttcagaaatcacggcacggcggatcttaaaaaaatcaatgcgctt
ttggaagatctcgcagttttgggaattgacgcagtttatgaaagcgataatgctaaaatg
attaaaaaaattcaagtccaagctgatgaaataggaatccgcgaaatggttgataaacta
atcataaaagcgcaaaaaagagcggaatatggtgaattcagccttggacattttgctttg
ggatttaaaaattacacacattttacaagcccgatcagaagatacagcgatcttttactg
catcgatttttaaaggcaaacgccaaaaaagatactaaattttacaattacttgctttta
aatatcggcgaaatttgcgaaaatttaaacatccttgaacgcgaagctgacaaagttgaa
tttgattttaacgatagaaaatttgcgcgctttgcaaaagaaaatttaggtaaaattttt
cgctgttatattgacgaaaacacgactcaaacaatagcaaggcttgatgataaattaaaa
ggcgcaagaatttttatagataattttacatgcgatattttaacgccggtgcttgtaaga
cttgaaagcagtgatataggaactgcaaaaatcacaggaaaagtggtaaaaaaacaggat
gtatag
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