Corynebacterium hadale: CHAD_09485
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Entry
CHAD_09485 CDS
T09187
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
chad
Corynebacterium hadale
Pathway
chad03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chad00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CHAD_09485 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chad03019
]
CHAD_09485 (rne)
03009 Ribosome biogenesis [BR:
chad03009
]
CHAD_09485 (rne)
Enzymes [BR:
chad01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
CHAD_09485 (rne)
Messenger RNA biogenesis [BR:
chad03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CHAD_09485 (rne)
Ribosome biogenesis [BR:
chad03009
]
Prokaryotic type
rRNA processing factors
CHAD_09485 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
IF2_N
Motif
Other DBs
NCBI-ProteinID:
WKC60755
LinkDB
All DBs
Position
complement(2024613..2028092)
Genome browser
AA seq
1159 aa
AA seq
DB search
MAQNEESTPKRRRSTKATAKKSAKPAKKSTKKSTKKAPAKREQPANEPTVNPYATFDRSR
LKDKMRVFQLAKELDVPSKDLVVALSDMGVVKVAQSSLTRAESEQLLDALSPDTNAPQSS
DAGDESSDADEKIRHRVRKDVENEIHQIEDKVNAELATADEPDTDPSDDASDEPLTDVEP
DVTPAPEDESVTEYAPLFKAPTRSQRRRARRAAQAARAAELDAAEGSDGQDDLGASSSDS
GEGTSRTAEGGSADSARSGRQQRNRGNAKASKASDTRGQESADGAERGVDTQEAEQIDEP
KAIKGSARLEAKRRRRSERSAEERKRSRIVSQAEFLARRESVQRTMVVRDRERHYGTGTV
TQVGVLEDGLLVEHFVDTEDQVTMVGNIYLGRVQNVLPSMEAAFIDYGQGRNGVLYAGEI
DWKSAGLGGRARRIENALKSGDQVVVQVTKDPVGHKGARLTTQISLAGRFLVYVPGGRTA
GISRKLPAPERKRLKEILHKVVPEEGGAIIRTAAENITEEAIAADVQRLHSQWEDIKELA
EREKKSHGAKPVTLYEEPALLIKVVRDLFNEDFNKLIVDGKKSYKTIRAYVESVAPDLLG
RVKKYRSKKHDGRDAFETYRVDEQLEKALARKVWLPSGGTLIIEHTEALTVIDVNTGKYT
GSGGNLEETVTKNNLEAAEEIVRQIRLRDIGGMIIIDFIDMILPENQELVVRRLKESLGR
DRTRHNVSEVTSLGLVQLTRKRLGNGLLETFSVPCHCCDGRGILLTEDPVVEEKRARYGR
VDSKRLPSGQHPAARAMHSALYEAPKPVEKPLDDEAIDELADAVVAEEKEKEDEPKTSSR
RRGRRGSGRGRGRNRSQAPEQNAPDAEEHRDQHGSEENTVLSSEPAENDGVNEAGSETQQ
ADGGNERGGRNRRRRRQAQRKNAKAEHSKPVAASSGASEDVGDDNDHEDTPAQRTSRAGR
SKKRRSARRAAPRSSSNETEAPAHAENENPGNSRQSFEDAVADFEKSPRRRRKTRGNSRS
DQRPQRNEWNDDSQASEAQQPVRQGTTDQSGTRDRGASAGESTVNRGSVETSRDASGGRR
RRRAVRRTNRSVSSEDGSAPNPRQDGGRNPRNAGAHGDTSSQRGTRRHEGGKDSGQHGEE
AGRQRSRRGRRRAARKRRS
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
gtggcacagaacgaggaatccacgccaaagaggcgccgcagcacgaaggcgacggcgaaa
aagtcggcaaaaccggccaagaaatcgacaaagaagtcaacaaagaaggctcctgcgaag
cgcgagcagccagccaatgagccaacggtcaacccctacgcgacgtttgaccgctctcgt
ctcaaggacaagatgcgcgtcttccagttggccaaagagctcgacgtgccttcgaaagac
ctggtcgttgcgctgtcggacatgggagtagtcaaggtagcgcagtcctcgctcactcgc
gctgagagcgagcagcttctcgacgcactgtctcccgacaccaacgcaccccaatcaagc
gacgctggggacgagtcttccgacgcggacgagaagatccgacaccgcgtacgcaaagac
gtggagaacgagatccaccaaatcgaggacaaggtcaatgccgagttggccaccgcagat
gaaccggacacggatccgagcgacgatgcttccgacgagccgctcactgacgtggaacct
gacgtgacgccggcgccagaggacgagtcggtcaccgagtacgctccgctgttcaaggct
ccgacgcgttcgcagcgtcgacgcgctcgtcgtgcagcgcaggctgcccgtgctgctgag
ctcgacgcggcggaaggttccgacggacaggatgacttgggcgcctcatcttctgattct
ggggaaggtacctctcgcacagcggaaggaggctctgcggactccgcgcgtagcgggcgg
caacaacggaatcgcggcaacgcaaaggcgagcaaggccagcgacacacgcgggcaggag
agcgctgatggggcagagcgtggcgtcgatacgcaagaggctgagcagatagacgaaccg
aaggcgatcaagggatcggctcgtctggaagcgaagcgacgtcgtcgcagtgagcggagt
gcggaggagcgtaagcgctcgcgcatcgtcagccaggcagagtttcttgcgcggcgcgag
tccgtgcagcgcaccatggtggtgcgagaccgtgagcggcactatggaacgggaacggtg
acacaggtcggggtgctcgaggacggcctgctcgttgagcactttgttgacacagaagac
caggtcaccatggttgggaacatctaccttgggcgcgtgcaaaacgtgctgcccagcatg
gaagccgcgtttattgactacggacaaggccgaaacggtgtgctgtacgcgggcgaaatc
gactggaagtctgctggactcgggggtcgcgcgcgacgaattgaaaacgcgctgaagtcc
ggcgaccaggtcgtcgttcaggtcaccaaagacccggttggacataagggtgcccgtctg
acgacccaaatttcgttggcggggcggttccttgtctatgttccgggaggacgtacagcc
ggaatctcccgcaaactaccggccccggagcgcaagcgtttgaaggagatcctccacaag
gttgtacccgaggagggtggggcaatcatccgcaccgctgccgagaacatcactgaggaa
gcgattgcggcggacgtgcagcgccttcacagccagtgggaggacatcaaggaacttgcc
gagcgtgaaaagaagtctcatggcgcgaaaccggtgaccctttatgaggagccggcgcta
ttgatcaaggtcgtacgggatctttttaacgaggactttaataaactcatcgttgacggc
aagaaatcgtacaaaactattcgtgcgtacgttgaatccgtcgcgcctgacttgctcgga
cgcgtaaagaagtaccgcagcaagaagcacgatggacgtgatgcttttgagacgtaccgc
gtggatgagcagctcgaaaaggctttggctcggaaggtttggctgccgtccggtggcacc
ttgatcatcgagcacaccgaggcactgacggttatcgacgtcaacaccggcaagtacacc
ggatccggcggaaacctcgaggagacggtgacgaaaaacaacctcgaagcagccgaggag
attgttcgccaaatccgcctgcgcgacatcggtggcatgatcatcatcgacttcatcgac
atgatcctgccggagaaccaagaattggttgttcgacgtctcaaggaatcactggggcgc
gaccgcacccgccacaatgtctccgaggtaacttctctggggctggtacagctcaccaga
aagcgtcttgggaacggtcttcttgagacgttctccgtaccctgccattgctgcgacggt
cgaggcattctgctgaccgaagatccagttgttgaagagaagcgagcgcgatacgggcgc
gtcgattccaagcgactcccgtccggtcagcaccctgcggccagagcgatgcattctgcg
ctttacgaggcgccgaaacccgtagagaagccgctggatgacgaggccatcgacgaattg
gcggatgctgtcgtggcggaagaaaaggaaaaggaggacgagccgaagacttcgtcgagg
cgacgcggtcgtcgcggctccggtcgaggtcgtggccgaaatcgttcgcaagcgcctgaa
cagaacgcaccagacgccgaagagcaccgagatcagcacggcagtgaggaaaacactgtt
cttagctcggagccagcagagaacgacggcgtcaacgaggccggaagtgaaactcagcag
gccgatggtggcaatgagcgtggtggacgcaacaggcgcaggcgacgtcaagcgcagcga
aagaatgcgaaggccgagcactcgaagccagttgcggcgtcgagcggagcttccgaggat
gtcggcgacgacaacgaccacgaagacacgccggcgcagcgaacctcgcgagcagggcga
tccaagaagcgtcgcagcgcccggagagcagccccccgtagctcctcgaacgagactgaa
gctcctgcgcacgcagaaaacgagaaccctggcaactcgcggcagagctttgaagatgca
gtggcggactttgagaagtcaccgcgtcgtcgacggaagacccggggcaattctcgctcc
gatcaacggccacaacgcaacgagtggaacgacgattcgcaggcgagtgaagcccagcaa
cctgtaaggcaaggcacgacggatcagtctggtacgcgagaccgaggggcgagcgccggg
gaatcgacggtgaatcgcgggagcgtcgaaacttcccgtgacgcctctggaggccgtcgt
cgccgtcgagcggttcggcggacgaatcggagtgtgtcgtccgaggatggttccgcgccc
aacccccgacaagatggcgggcgtaatcctcgcaatgccggcgcccacggggacaccagc
agtcaacgtggcacccgtagacacgaaggtggcaaggactcggggcagcatggtgaggag
gcaggacgccagcgaagccggcgcggcaggcgacgggccgcgcgcaagcgccgctcctag
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