Chromobacterium haemolyticum: CH06BL_05060
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Entry
CH06BL_05060 CDS
T06734
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
chae
Chromobacterium haemolyticum
Pathway
chae03030
DNA replication
chae03430
Mismatch repair
chae03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH06BL_05060 (dnaE)
03430 Mismatch repair
CH06BL_05060 (dnaE)
03440 Homologous recombination
CH06BL_05060 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chae03032
]
CH06BL_05060 (dnaE)
03400 DNA repair and recombination proteins [BR:
chae03400
]
CH06BL_05060 (dnaE)
Enzymes [BR:
chae01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
CH06BL_05060 (dnaE)
DNA replication proteins [BR:
chae03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
CH06BL_05060 (dnaE)
DNA repair and recombination proteins [BR:
chae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
CH06BL_05060 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
PHZA_PHZB
tRNA_anti_2
P63C
DUF2530
DUF7398
Motif
Other DBs
NCBI-ProteinID:
BBH11258
LinkDB
All DBs
Position
complement(556387..559836)
Genome browser
AA seq
1149 aa
AA seq
DB search
MNSPRFIHLRLHSEFSITDGIVRLDDAIKRAIKDNMPAVGMSDLMNIFGMVKFYKGCRDK
GIKPIVSCDVWLENEEDRDKPYRLMLTVKNRQGYGRLCELLADAYTHNQYRGRAELKRAW
LENGDNSGLICLSGAHLGDVGQALLMGQRDEARRRAEYWERCFPDNFYLELQRLDNPQVE
NAVQASLWLAGEIGLPVVATHPIQFMDPDDFKAHEARVCIAEGFTLGDKRRPRSFEENQY
FLSTDQMLERFADIPEALENSVEIARRCNISVQLGKNYLPQFPTPDGMTLDDYLVHLSQE
GLEERLAKLYPDPEVRAQERQRYDERLKIECDTIIQMGFPGYFLIVADFINWAKNNGCPV
GPGRGSGAGSLVAYSIGITDIDPLAYALLFERFLNPERVSMPDFDIDFCQDNRYRVIEYV
RQKYGAEAVSQIATFGTMAAKAVVRDVGRVLDLPYMFCDGVSKLIPAAPGKQYSLDDAVE
MEPVLRERLENEEELRELWELAKKLEGLTRNIGMHAGGVLIAPGKITDFCPMYQASADGA
VPVSMLDKDDVEKVGLVKFDFLGLRNLTIIELAVNYIKNLDPSFDTNLNLLEFTDPAAYK
VLQQANTTAVFQLESDGMKRLLEKLKPDRFEDIIAVLALYRPGPLGSGMVDDFILRKAGK
QEVDYYHPDLQACLDPTYGVIVYQEQVMQISQIIGGYTLGGADMLRRAMGKKKPEEMAEH
RGKIAQGAATKGYDPKLAEMLFDLMAKFAEYGFNKSHTAAYAVVSYQTAWLKAHHTAAFM
AATMSSELDNTDQLKVFYDDSVDSKNGLIFLPPDVNQSYYRFVPVDRKHIRYALGAIKGT
GEAAVDHIVAVRAESGPFKDLFDFCRRTDKKIVNKRVIEALIRAGAFDSIEPNRAKLFGN
VGLAMNAAEQEHANANQGGLFDMFGDDVAPSVEMVEIKPWSDAVKLAEEKLAIGFYLSGH
PFAAYAKEIRGFIKTPLSRLSPRKEPQLLAGFVTGIRVKVGNRGKMAFVQLDDGSAKLEV
SLFAESFEANRSRLKDDVVLVIEGKVSEDNFSGGLRIVADKVYELGEARSRYARSLSLKL
AGKVDVSKLKSQLHPFRSEDAGCPVRIHYNNGAASGDLMLPPPWGVRLDDGLLLALQDWL
GNDKVKVMW
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgaactcacctcgttttatccatctgcgcctccactcggagttctccatcaccgacggc
atcgtgcgcctggatgacgccatcaagcgcgccatcaaggacaatatgcccgcggtgggc
atgtccgatctgatgaacatcttcggcatggtcaagttctacaagggctgccgggacaaa
ggcatcaagcccatcgtgtcctgcgatgtctggctggaaaacgaggaagaccgcgataag
ccttatcgcctgatgctgacggtcaagaaccgtcagggctacgggcgcttgtgcgaactg
ctggccgacgcctatacccacaaccagtaccgcggccgtgccgagctcaagcgcgcctgg
ctggaaaacggcgacaacagcggcctgatctgcctgtccggcgctcacctgggtgacgtt
ggccaagccttgctgatgggccagcgcgacgaagcgcgccgccgcgccgaatattgggaa
cgctgcttcccggacaatttctacctggaactgcaacgcctggacaacccgcaggtggaa
aacgcggtgcaagcctcgctgtggctggccggcgagatcggcctgccggtagtggccacc
cacccgatccagtttatggacccggacgatttcaaggcccacgaggcccgcgtctgcatc
gcagagggcttcaccctgggcgacaagcgccggccgcgcagcttcgaggaaaaccagtac
ttcctgtccactgaccagatgctggagcgcttcgccgacattccagaagcgctggaaaac
tcagtggaaatcgcccgccgctgcaatatcagcgtgcaactgggcaaaaactacctgccg
caattccccaccccggacggcatgacactggacgactacctggtgcacctgtcccaggaa
ggcctggaagaacggctggccaagctctaccccgacccggaagtccgcgcccaagagcgg
cagcgttacgacgagcgcttgaagatcgagtgcgacaccatcatccagatgggcttcccc
ggctacttcctgatcgttgccgacttcatcaactgggcaaaaaacaatggctgcccggtg
gggccgggccgcggctccggcgccggttcgctggtggcctacagcataggcatcaccgat
atcgatccgctggcttacgcgctgctgttcgaacgcttcctcaaccccgagcgggtatcg
atgcccgacttcgacatcgacttctgccaagacaaccgttaccgcgtgatcgagtacgtg
cgccagaaatacggcgccgaggcggtatcgcaaatcgccaccttcggcaccatggccgcc
aaggcggtagtgcgcgacgttggccgggtgctggacctgccctatatgttctgcgacggc
gtatccaagctgattccggccgcgcccggcaagcagtattcactggacgacgcagtagaa
atggagccggtgctgcgcgagcgactggaaaacgaggaagagctgcgcgagctatgggaa
ctggccaagaagttggaaggcctgacccgcaacatcggcatgcacgccggcggcgtcttg
atcgcgccgggcaaaatcaccgacttctgcccgatgtaccaagccagcgccgacggcgcg
gtgccggtatcgatgctggacaaggacgatgtggaaaaagtgggcctggtgaagttcgac
ttcctgggcctgcgcaacctgaccattatcgaactggcggtcaactacatcaaaaacctg
gacccgagtttcgacaccaatctcaacctgctcgagttcaccgaccccgccgcctacaaa
gtactgcaacaggccaacactaccgccgtattccagcttgaatcggacggcatgaaacgg
ctgctggaaaaactgaagccagaccgtttcgaagacatcatcgctgtgctggccctgtat
cgacccggcccgctcggctccggcatggtggacgacttcatcctgcgcaaagccggcaag
caggaggtcgattactaccacccggacctgcaggcctgcctggacccgacttacggcgtg
atcgtgtatcaggaacaagtgatgcagatctcgcagatcatcggcggctacaccctgggc
ggcgccgacatgctgcggcgcgcgatgggcaagaaaaagcccgaggaaatggccgaacac
cgcggcaagatcgcccagggcgcggccaccaagggctacgatcccaagttggccgagatg
ctgttcgacctgatggccaagttcgccgagtacggcttcaacaagtcgcacaccgccgcc
tacgccgtggtgtcctaccagaccgcctggctcaaggcccatcacaccgcggccttcatg
gcggccaccatgtcctctgaattggacaacaccgaccagctcaaggtgttctacgacgac
agcgtggacagcaaaaacggcctgatcttcctgccgccggacgtcaaccagagctactac
cgcttcgtgccggtagaccgcaaacacatccgctacgccttgggcgcgatcaaaggcacc
ggcgaagcggctgtcgaccacatcgtcgcggtacgcgcggaatccggcccgttcaaggac
ctgttcgacttctgccgccgcaccgataaaaaaatcgtcaacaagcgcgtgatcgaggcg
ctgatccgcgccggcgccttcgacagcatcgaacccaaccgggccaagttgttcggcaat
gtcggcctggcgatgaacgccgccgagcaagaacacgccaacgccaatcagggcggcctg
ttcgacatgttcggcgacgatgtcgcccccagcgtggaaatggtggaaatcaagccgtgg
agcgacgcagtcaaactggcggaggaaaagctggccatcggcttctatctgtcaggccat
cccttcgccgcgtacgccaaggaaattcgcggcttcatcaaaaccccgctgtcccggctc
agcccgcgtaaagagccgcaactcctggccggtttcgtcactggcatccgagtcaaagtg
ggcaaccgcggcaaaatggccttcgtccagttggatgacggcagcgccaagctggaagtc
agcctgttcgctgaaagcttcgaagccaaccgcagccggttgaaagacgacgtagtactg
gtgatagaaggcaaagtaagcgaggacaacttctccggcggcctgcgcatcgtcgccgat
aaagtctatgaattgggcgaggcgcgcagccgctacgcacgcagcctgtcgctgaagctt
gccggcaaggtggacgttagcaagctcaagtcccaactgcatccgttccgcagcgaggac
gccggctgcccggtgcgcatccattacaacaacggcgcggccagcggcgatctgatgctg
cccccgccctggggcgtccgcttggacgacggcctcttgctggcgctgcaggactggctg
ggcaacgacaaggtcaaagtgatgtggtga
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integrated database retrieval system
