Chromobacterium haemolyticum: CH06BL_07890
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Entry
CH06BL_07890 CDS
T06734
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
chae
Chromobacterium haemolyticum
Pathway
chae03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CH06BL_07890 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chae03400
]
CH06BL_07890 (mfd)
Enzymes [BR:
chae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CH06BL_07890 (mfd)
DNA repair and recombination proteins [BR:
chae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CH06BL_07890 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
BBH11541
LinkDB
All DBs
Position
complement(908761..912165)
Genome browser
AA seq
1134 aa
AA seq
DB search
MLDNLPRIPPASQKTRHGRLPAGLDANIVARLAAQRRPLLILAADAQSAQRLQAEAPFFA
PSLRVALLPDWETLPYDHFSPHGELVSERLATLWQIHQRECDVIIAPVGTAMTRLAPISY
LLGRTFFLQAKQRLDVEQLRANMVTAGYHHVTQVMAPGEFSIRGGLIDLFPMGSALPYRI
DLFDDEIDSLRTFDPDNQRTLYPVPEIRMLPAREYPADESGVTAFRQRYRERIEGDPSKS
RIYKDVSQGLWPAGIEYFLPLFFDDTATLFDYLGDDALIVLHHDVQHAANVFWQDVESRY
DMARGDLERPVLPPADIFLRPDELMARLKPYARIELAGDGELAEGCAPLPELAVERRAEQ
PLHKLDAFIRSGRQRILITVESLGRRETVHQFLQEHGIKPRPVDGWAEFIAGEMPLALCV
APLYTGFALPGAGIAVVTESELYQHVARSHTRRKSARAGSDSMLRDLAEVKAGDPVVHEQ
HGIGRYVGLVSMDLGEGETELMQLEYADSATLYVPVSQLHLISRYAGGAADQIHLHKLGN
PAWEKAKKRAAEKARDTAAELLNLYAQRAAREGHSFSLSHQDYDAFAAGFGFEETPDQAS
AIEAVVQDMCSGKPMDRLVCGDVGFGKTEVALRAAFVAVLGGKQVAVLVPTTLLAEQHFQ
NFSDRFADWPVKIAELSRFRSAKESKASLAGLADGGVDIVIGTHKLVQPDIQFKNLGLVI
IDEEHRFGVRQKEQLKRLRANVDVLTLTATPIPRTLSMALEGLRDFSVIATAPSRRLAVK
TFVSPMANGVIREAVLRELKRGGQVFFLHNEVDTIENMREKLAELVPEARIGVAHGQLRE
RELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTILINRADKFGLAQLHQLRGRVGRSH
HQAYAYLLTPEGITKDAMKRLEAIQMSEELGAGFYLAMHDLEIRGAGEVLGEGQSGEMQE
VGFSLFTEMLKQAVRDLKKGRTPDLDAPLGVTTEINMHSPALLPDGYCPDVHERLVLYKR
LATCESEQEIDDIHEELIDRFGLPPQTVKTLIDSHRLRLLAKPLGVQKLDASEVAIQVHF
VKNPPIDPMKIIQLLQTKRNYRLAGQDKLRVEADIQDVALRVVRVKELLKELSA
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgttggataatctcccgcggatacctcccgccagtcagaaaactcgtcacggacgcctg
cccgccgggctggacgccaacatcgtcgcccgcctcgcagcccagcggcgtccgctgctc
atcctcgccgccgacgcgcaatccgcccaacgcctgcaagccgaggccccattctttgcg
ccctcgctgcgcgtggcgctgctgccggactgggaaaccctgccctatgaccacttctcc
ccccacggcgaactggtcagcgaacggctggccaccttgtggcagatccatcagcgcgaa
tgcgatgtgatcatcgccccggtcggcactgcgatgacgcggctggcgccgataagctat
ttgctgggacgcacctttttcctgcaagccaagcagcggctggacgtggaacagctgcgc
gccaatatggtcaccgccggctaccaccacgtcactcaggtgatggccccgggagaattc
tccatccgcggcggcttgatcgatctgttcccaatgggctcggcgctgccttaccgcatc
gatctgttcgacgacgaaatcgacagcctgcgcaccttcgatccggacaaccagcgtacc
ctgtacccggtaccggaaatccggatgctgccggcgcgcgagtacccggcggatgaaagc
ggcgtcaccgccttccgccagcgctaccgcgaacgcatcgaaggcgaccccagcaaaagc
cgcatctataaagacgtctctcaaggcctgtggccggccggcatcgaatacttcctaccg
ctgttcttcgacgacaccgccactctgttcgactacttgggcgacgacgcgctgattgtg
ttgcaccatgatgtgcaacacgccgccaacgtcttctggcaagacgtggaaagccgctac
gacatggcgcgcggcgatctggaacgcccggtactgccgccggccgacattttcctgcgc
ccggacgaactgatggcgcggctcaaaccctacgcccgcatcgaactggccggcgacggc
gagctcgcggaaggctgcgccccgctgccggagctggcggtggagcgccgcgccgagcag
ccactgcacaagctggacgccttcatccgcagcggccgtcagcgcatcctgattacagtg
gaaagcctgggccgccgcgaaaccgtccaccagttcctgcaagagcacggcattaagccg
cgcccggtggacggctgggccgaattcatcgccggcgagatgccgctggcgctctgcgtg
gcaccgctctacaccggtttcgccctgcccggcgccggcatcgccgtagtcaccgaatcc
gagttgtaccaacatgtggcgcgcagccacacccgccgcaaaagcgcgcgcgccggttcc
gactccatgctgcgcgacctggccgaagtcaaggcgggggatccggtggtgcatgagcag
cacggcatcggccgctacgtgggcctggtgtccatggacctgggcgaaggcgaaaccgaa
ctgatgcaactggagtacgcggacagcgccaccctctatgtgcccgtcagccaactgcac
ctgatctcccgctacgccggcggcgcggcggaccagatccacctgcacaagctgggcaat
ccagcctgggaaaaagccaagaaacgcgccgcggaaaaagcccgcgacacggccgcggaa
ctgctcaacctttacgcgcaacgcgccgcgcgggaaggccacagcttcagcctgtcccat
caagactacgacgccttcgccgccggtttcggcttcgaagaaaccccggaccaggccagc
gccatcgaagccgtggttcaagacatgtgctccggcaagccgatggaccggctggtctgc
ggcgacgtcggcttcggcaagaccgaagtggcgctgcgcgccgccttcgtcgctgtcctt
ggcggcaaacaggtggcagtgctggtgcccaccaccctgctggcggaacagcatttccag
aatttctccgaccgctttgccgactggccggtgaaaatcgcagaactctcccgcttccgc
agcgccaaggaaagcaaggcctcgctggccggcctggccgacggcggcgtcgacatcgtc
atcggcacccacaagctggtgcagccggacatccaattcaagaacctgggcctggttatt
atcgatgaggagcaccgtttcggcgtgcgccagaaagaacagctcaaacggttgcgcgcc
aatgtggacgtgctgacgctgaccgcgacgccgattccgcgcaccctgtcaatggcgctg
gaagggttgcgcgacttctccgtcatcgccaccgcccccagccgccggctagcggtgaaa
acctttgtcagcccgatggccaacggcgtgatacgcgaagcggtactccgcgaactcaag
cgcggcggccaggttttcttcctgcacaatgaggtggacaccatagaaaacatgcgggaa
aaactggcggaactggtgccggaagcacgcattggcgtggcccacggtcaattgcgcgag
cgcgagctggaacaagtgatgcgcgacttcctgcagcagcgcttcaatgtgctgctgtgc
tctaccatcattgaaaccggcatcgacatccccaacgccaacaccattctgatcaatcgg
gccgacaagttcggcctggcccagctgcaccagctgcgcggccgcgtcggccgcagccac
caccaggcctatgcctatctgctgacgccggaaggcatcaccaaagacgcgatgaaacgg
ctggaggccatccagatgtccgaggagctgggcgcgggcttctacctagcgatgcacgac
ctggaaatccgcggcgccggcgaggtgctgggcgaaggccaatccggcgaaatgcaggaa
gtgggtttctctctgttcaccgaaatgctcaaacaggcggtgcgcgacctcaaaaaagga
cgcactccggacctagacgcgccactgggcgtcaccactgaaatcaatatgcacagcccg
gcgctgctgccggacggttattgccccgacgtgcacgaacggctggtgctgtacaagcgg
ctggccacctgcgagagcgagcaggaaatcgacgacattcacgaagagctgatcgaccgc
ttcggtttgccgccgcaaaccgtcaagaccctgatagacagccaccgcctgcgcctgctg
gccaagccgctgggcgtgcaaaagctggacgccagcgaggtagccattcaggttcatttc
gtcaagaacccgccgatagaccctatgaagatcatccagttgctgcaaaccaagcgcaat
taccggctggcgggccaggacaagctgcgcgtggaggccgatatccaggacgtggcgctg
cgcgtggtcagggtcaaggaactgctgaaggagctgagcgcctaa
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