Chromobacterium haemolyticum: CH06BL_11360
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Entry
CH06BL_11360 CDS
T06734
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
chae
Chromobacterium haemolyticum
Pathway
chae03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CH06BL_11360 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chae03400
]
CH06BL_11360 (sbcB)
Enzymes [BR:
chae01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
CH06BL_11360 (sbcB)
DNA repair and recombination proteins [BR:
chae03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
CH06BL_11360 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
CH06BL_11360 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CH06BL_11360 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
BBH11888
LinkDB
All DBs
Position
complement(1213990..1215405)
Genome browser
AA seq
471 aa
AA seq
DB search
MSNHSFFWHDYETFGAVPRQDRPSQFAGIRTDADLNEIGEPVMLYARPAPDYLPSPVACL
LTGITPQWCLQHGVAEHEFAGVIERELATPGTIGVGYNSIRFDDEVTRFLFWRNLMDPYA
REWQNQCGRWDLLDLVRATFALRPDGIQWPQHEDGRPSFKLEHLSAANGLAHEAAHDALS
DVRATIALARLIKQHQPKLFDFYLSLRKKDAVKVQLSLHAPRPVLHVSGMYGAERGNMAV
VWPLAAHPYNANEVIVWDLSHDPRELQGLGPDAIRERLYTRSEDLPEGVQRLPLKTVHIN
KSPFVVANLKVLSPERAAHWGLDMEQVQRHADYAGALPDLTPVWRKVYKRESGEPRDVDE
NLYGGFVSNNDRKVLTKLRRMSADQLAGEMAFFEDPQLAELLFRYRARNFPRSLSGEEQQ
RWQTWRQAKLNGGPGRDFQQFRQELAEARAGELNEQAQSVLAQLEAYAAQL
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcacagcttcttttggcacgattacgaaaccttcggcgccgtgccccgccag
gaccgcccgtcgcagttcgccggcatccgcaccgacgccgatctcaatgaaatcggcgaa
ccggtcatgctctacgcccggccggcgcccgattacctgccgtctccggtggcctgcctg
ctgaccggcatcaccccgcagtggtgcttgcagcatggcgtggccgagcacgaattcgcc
ggcgtgatcgaacgcgaactggcgacgccgggcacgattggagttggttacaactcaatc
cgcttcgacgacgaagtcacccgctttctgttctggcgcaatctgatggacccctacgcg
cgcgaatggcagaaccaatgcggccgctgggatctgctggacctggtgcgcgccaccttc
gcgctgcgcccggacggcattcaatggccgcaacacgaagacggacgtcccagcttcaaa
ctggaacatctaagcgccgccaacggcctggcccacgaagccgcccacgatgcgctctcc
gatgtgcgcgccaccattgcgctggcgcgcctgatcaaacagcatcagcccaagctgttc
gacttctacctgtcgctgcgcaaaaaagacgcggtcaaggttcagctcagccttcacgcc
cccaggcccgtgctgcacgtttccggcatgtacggcgcggagcgcggcaatatggccgtg
gtctggccgctggcggctcacccttacaatgctaacgaggtcatcgtctgggacttgtcc
cacgacccccgcgaactgcaaggcctggggccggacgccatccgcgaacgcttgtacacc
cgcagcgaagacctgcccgaaggcgtgcagcgcctgccgctcaaaaccgtgcatatcaat
aaatcgcccttcgtggtcgccaatctcaaggtgctgagcccggaacgcgccgcgcattgg
ggcctggacatggagcaagtccagcggcacgcggactacgccggcgccttgccggacctg
accccggtctggagaaaagtctataagcgcgagtcaggcgagccccgcgacgtcgacgag
aacctctacggcggattcgtttcaaataacgaccgcaaagtgctgaccaagctgcgccgc
atgtcggccgaccagctcgccggtgaaatggctttcttcgaggacccgcaactggccgaa
ctcttgttccgttaccgcgcgcgcaacttcccgcgttccctgtccggcgaggagcaacag
cgctggcagacatggcgccaagccaagcttaacggcggccccggtcgtgattttcagcaa
ttccgtcaagaactggcggaggcccgcgccggcgagctaaacgaacaggcgcaaagcgtg
ctggcacagttggaggcctacgccgcgcagctgtaa
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