Chromobacterium haemolyticum: CH06BL_30000
Help
Entry
CH06BL_30000 CDS
T06734
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
chae
Chromobacterium haemolyticum
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chae03009
]
CH06BL_30000 (rlmD)
Enzymes [BR:
chae01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
CH06BL_30000 (rlmD)
Ribosome biogenesis [BR:
chae03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
CH06BL_30000 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_15
Methyltransf_25
TRAM
MTS
UPF0020
Methyltransf_11
CMAS
Methyltr_RsmB-F
Methyltransf_23
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
BBH13752
LinkDB
All DBs
Position
3314868..3316406
Genome browser
AA seq
512 aa
AA seq
DB search
MTHKQTIAQVESLDHEGRGVAHVDGKTIFIDGALPYETVVYSAYRKKSSYENANTSQVLK
ESFLRTQPRCPHYGTCGGCSMQHVEFSAQVAVKQRVLEDNLARIGRVKPQQVLTPIAGPA
WHYRHRARMSARLVEKKGGVLVGFHEKRSTYITDMRECHILPRHISDLIVPLREMIYKLS
INNRMPQVELAVGDKVDILVFRNMEAINDADHALLRAFSDAHGSKERPLQMWLQPKGPDT
CYPVYPLDAPKLTYTLPEYRVEMPYYPTEFTQVNPEINAVMVARALKFLDPQPGERIADM
FCGIGNFTLPIARSGASVHGMEGSQPLVKRAVENATHNGLQDKVSYEMANLFEVTEESFA
ALGKFDKMLVDPPRDGAVQLLKAITEDTAPKRIVYVSCNPATLARDANVLVHTKGYTLKA
AGIINMFPHTAHVESVAWFEKTGPCKSRSEIAVIEAAEEAEREAVKAAQRAEAAAEAAKK
ERELAEKAAAKQARRDYYFAEQARREAEQQAQ
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgacgcacaaacagactatcgctcaggtcgaatcgctggaccacgaaggccggggagtc
gcccacgtcgacggcaagaccatcttcatcgatggcgcgctgccgtatgaaaccgtggtc
tacagcgcctatcgcaagaagtcgtcctacgaaaacgccaacaccagccaagtgctgaag
gaaagcttcctgcgcacgcagccgcgctgtccgcattacggcacctgcggcggctgttcg
atgcagcatgtggagttctccgcccaagtggcggtcaagcaaagggtgctggaagacaat
ctggcccgcatcggccgggtcaagccgcaacaggtgctgacccccatcgccggcccggcc
tggcactaccgccaccgcgcgcggatgtcggcgcggctggtggagaagaagggcggcgtg
ctggtgggtttccacgagaagcgctccacctacattaccgatatgcgcgagtgccacatc
ctgccgcgccacatctctgacctgatcgtgccgctgcgcgagatgatctataaactgtcg
atcaacaaccgcatgccccaggtggagctggcggtgggcgacaaggtggacatcctggtg
ttccgcaatatggaagccatcaacgacgccgaccacgccttgttgcgcgccttctccgac
gcccacggcagcaaggagcggccgctgcaaatgtggttgcagcccaaggggccggacacc
tgttatccggtctacccgctggacgcgcccaagctgacttacaccctgccggaataccgc
gtggaaatgccctactaccccaccgagttcacccaggtgaaccccgaaatcaatgcggtg
atggtggcgcgcgcgctgaaattcctggacccgcagccgggcgagcgcatcgccgacatg
ttctgcggcatcggcaacttcaccctgcccatcgcccgctccggcgccagcgtgcacggc
atggagggtagccaacccctggtcaagcgcgcggtggaaaacgccacccacaacggtctg
caggacaaggtcagctatgaaatggccaatttgttcgaagtcaccgaggaatccttcgcc
gcgctcggcaagttcgacaagatgctggtggacccgccgcgcgacggcgcggtgcagctg
ttgaaggccatcaccgaggacaccgcgcccaagcgcatcgtctacgtgtcctgtaacccg
gccacgctggcgcgcgacgccaatgtgctggtgcacaccaagggttacacgctgaaggcg
gccggcatcatcaatatgttccctcacaccgcccatgtggaatccgtggcctggttcgaa
aagaccggcccgtgcaagagccgcagcgaaatcgccgtgatcgaagccgccgaggaagcc
gagcgcgaagcggtgaaggccgcccagcgcgcggaggcggcggcggaagccgccaagaaa
gagcgggaactggcggaaaaggccgcggccaagcaagcgcgccgcgattattatttcgcc
gagcaagcgcgccgcgaagcggaacagcaagcgcagtag
DBGET
integrated database retrieval system
