Chromobacterium haemolyticum: CH06BL_38250
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Entry
CH06BL_38250 CDS
T06734
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chae
Chromobacterium haemolyticum
Pathway
chae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH06BL_38250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chae03019
]
CH06BL_38250
Enzymes [BR:
chae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH06BL_38250
Messenger RNA biogenesis [BR:
chae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH06BL_38250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBH14577
LinkDB
All DBs
Position
complement(4208154..4209491)
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AA seq
445 aa
AA seq
DB search
MLFSELGLSPEILRAIEEQGYSQPTPIQEKAIPLVLSSRDLLAAAQTGTGKTAAFMLPIL
ERLKKYANTSVSPAMHPLRALVLSPTRELADQIGVNVKSYTKYLPLRATTVFGGVNMDPQ
TQELRRGVEILIATPGRLLDHIQQKTVQLNKVEVLVLDEGDRMLDMGFIQDIRKIMGMLP
KERQTLLFSATFAPEIKRLAADFMKSPQTVEVARQNATNDQVEQIVYSVDAFKKRHLLTH
LIKSREMSQVIVFCKTKLSADRLARELQRDGLQAEAIHGDKAQGARLETLAGFKEGKLRI
LVATDVAARGLDVTELPYVVNFELPNAPEDYVHRIGRTGRAGAKGVAISLMSPEETRQHE
SIEKLTKQTLTPQIVDGFRPSWLTRPSERERERERLPAPSKPEASVLAGSTEGVKRPLSG
RRSRKAKREVPALLLPPRYKVEIIR
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgctgttttccgaactcgggctgtcgcccgagattctgcgcgccatcgaagaacagggc
tattcccagcccaccccgattcaggaaaaggcgatccctctggtcttgtcgagccgcgat
ttgctggccgccgcccaaaccggcaccggcaaaaccgcagccttcatgctgcccattctg
gagcgcctgaagaaatacgccaataccagcgtgtccccggcgatgcatccgctgcgtgcc
ctggtgttgtctcctacccgcgaattggcggatcagatcggcgtcaacgtcaagagctac
accaaatacctgcctctgcgcgccaccacggtgtttggcggcgtcaatatggacccgcaa
actcaggaactgcgccgcggcgtggaaatcctgatcgccacgccgggccgcctgctagac
cacatccagcaaaaaaccgttcaattgaacaaggtggaagtgctggtgctggacgaaggc
gaccgcatgctggatatgggctttattcaggacatccgcaagatcatggggatgctgccc
aaagagcgtcagaccctattgttctccgccacttttgcgccggagatcaaacggctggcc
gctgacttcatgaagtcgccgcaaacggtggaggtcgcgcgtcaaaacgccaccaacgat
caggtcgagcagattgtttactcggtggatgccttcaaaaagcgccatctgttgacgcat
ctgatcaaatctcgcgagatgagccaggtcatcgtgttttgcaagaccaagctcagcgcc
gaccgtctggcgcgtgaactgcagcgcgacggcctgcaagccgaagccattcacggcgac
aaggctcagggcgcgcgtctggaaacgctggcggggttcaaggaaggcaaactgcgcata
ttggtggccaccgatgtcgccgctcgcggcctggatgtgacggagttgccctatgtggtc
aacttcgagctgccgaacgccccggaagattatgtgcaccggattggccgtaccggccgc
gccggcgccaagggcgtggcgatttcgttaatgtccccggaagaaacccgtcagcacgag
tctatcgagaagctgaccaagcagacgttgacgccgcagatcgtcgacggtttccgccct
tcctggctgacgcgccccagtgagcgcgaacgggagcgtgagcgcttgccggcgccgtcc
aagccggaagcttcggttctggccggttcgaccgagggtgtgaagagacctttgagcggc
cgtcgtagccgcaaggcgaagcgggaggtgccggccttgctgctgccgccgcgctataag
gtggaaatcattcgctga
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