Chromobacterium haemolyticum: CH06BL_46240
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Entry
CH06BL_46240 CDS
T06734
Symbol
rhlE1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chae
Chromobacterium haemolyticum
Pathway
chae03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chae00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH06BL_46240 (rhlE1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chae03019
]
CH06BL_46240 (rhlE1)
Enzymes [BR:
chae01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH06BL_46240 (rhlE1)
Messenger RNA biogenesis [BR:
chae03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CH06BL_46240 (rhlE1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_25
HI1480
P-loop_SecA
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BBH15376
LinkDB
All DBs
Position
5041284..5042717
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AA seq
477 aa
AA seq
DB search
MSTLTFADLGLAEPLLRAVSETGYTTPTPIQAQAIPQVLQGGDLLAAAQTGTGKTAGFTL
PLLHILMGKPATQPGRPRALVLTPTRELAAQVEESVQTYGKHLPLTSMVMFGGVNINPQT
RALRKPLDILVATPGRLLDHAGQRNIDLSGVEILVLDEADRMLDMGFIHDIRKVLALLPA
KRQNLLFSATFSDEIKSLADRLLDNPKLVEVARRNTTNELVDQKIHLVDRDRKTDLLIHL
IKERNWFQALVFTRTKHGANRLAEKLEKTGIPAAAIHGNKSQNARTRALADFKSGELQVL
VATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGSKGEAVSLVCVDEFNFLKD
IEKLTKQSIERFSVPGFEADLSVKPEPIPMGGGNRRGQPQRQGGGGKPRHQPDSKPTGHG
HRSPASKPRQSQGQSQARNATNGQTGQRSSQGQGQGQRGKPSASRSSSALFSPPKGR
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atgtccacactcacctttgccgacctcggtctggccgaacccctgttgcgcgccgtcagc
gaaaccggctataccacccccaccccgattcaagcccaggccatcccgcaagtgctgcaa
ggcggcgacctgttggccgcggcccagaccggcaccggcaagaccgccggcttcaccctc
ccgctgctgcacatcctgatgggcaagccggccacccagccgggccgcccgcgcgcgctg
gtgctgacccccactcgcgaactggccgcccaggtggaagaatcggtacagacctacggc
aaacacctgccgctcacctccatggtgatgttcggcggcgtcaacatcaatccgcaaacc
cgcgcgctgcgcaagccgctggacattctggtggccacgccgggccgtctgctggaccat
gccggtcaacgcaatatcgacctgtccggcgttgaaattctggtgttggacgaagccgac
cgcatgctggacatgggcttcattcacgacatccgcaaagtgctggccctgctgccggcc
aaacgtcagaacctgctgttctccgccaccttctccgacgagatcaagagcctggccgac
cgcctgttggacaatcccaagctggtggaagtggcgcgccgcaataccaccaacgaactg
gtggaccaaaagatccacctggtggaccgcgaccgcaaaaccgacctgctgatccacctg
atcaaggagcgcaactggttccaggcgctggtgttcacccgcaccaagcacggcgccaac
cgcctggcggaaaagctggagaaaaccggcattcccgccgccgcgattcacggcaacaag
agccagaacgcgcgcacccgcgcgctggccgacttcaagagcggcgaattgcaagtgctg
gtcgccaccgacatcgccgcgcgcggcctggacatcgaccaactgccgcaagtggtcaac
ttcgaattgcccaatgtgccggaagactacgtgcaccgcatcggccgcaccggccgcgcc
ggcagcaagggcgaggctgtgtcgctggtctgcgtcgatgagttcaacttcctgaaggat
atcgagaagcttaccaagcaatcgatcgagcgcttctcggtaccgggtttcgaggccgat
ctgtcggtgaaacccgaacccattccgatgggcggcggcaatcgccgcggtcagccgcag
cgccagggcggcggcggcaagccgcgccaccagccggacagcaaacccaccggccacggc
catcgctcgccggcgtccaagccgcgtcagagccaaggacagagtcaggccagaaacgcc
acaaacggccagacgggtcagcgctcgtcgcaaggccagggtcagggccagcgcggcaag
ccctccgcctcgcgttcgagctcggccttgttcagcccgccgaagggccgctaa
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