Chlamydia psittaci C19/98: CPS0C_0270
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Entry
CPS0C_0270 CDS
T01863
Name
(GenBank) putative vacB/Rnb family exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
chc
Chlamydia psittaci C19/98
Pathway
chc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CPS0C_0270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chc03019
]
CPS0C_0270
03016 Transfer RNA biogenesis [BR:
chc03016
]
CPS0C_0270
Enzymes [BR:
chc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CPS0C_0270
Messenger RNA biogenesis [BR:
chc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CPS0C_0270
Transfer RNA biogenesis [BR:
chc03016
]
Prokaryotic type
tRNA degradation factors
CPS0C_0270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
CSD2
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
AEG85295
LinkDB
All DBs
Position
complement(253781..255826)
Genome browser
AA seq
681 aa
AA seq
DB search
MKRIRKKRPQSFRRNSKQILISGVLFVHGKKGFGFVTPDHPEEYPFDIFIPARDLKGALD
GDHVVVSLFPNSKEGEKRKGVIHQVISRGKTVLVGTITSLIDASTAFVCVNALGPEIPVK
AKLIPKRDYKIGDRLLLSTPVWKAKPESKEPPPLEMLEFIGNISNAKSDFPCIKAEYGIQ
EEFPEAVIEETNHFSQKHISQALRSRKDLRNLLCFTIDSITAKDFDDAVSLTYDNNDNYI
LGVHIADVSHYVTPHSALDQEASKRCNSIYFPGKVIPMLPPALSDNLCSLKPNVDRLAVS
VFMTFTKSGHLSDYEIFRSVIRSKYRMTYDEVDEIVENKQPHPIAKTLLAMAELSEKFSD
IREKRGCIRLVLPSFTMSLDNLQEPVTLIETRQTLSHKLIEEFMLKANEVVAYHISHQGV
SLPFRIHESPNDESLLSFQEIAKAMGFDIIMTPAQEPDFQYLLQESSAGHPLEPILHSQF
VRSMKTASYSTENKGHYGLKLDFYTHFTSPIRRYIDLIVHRLLFNPMSIEETRLEHIVRA
CSTQERIAAKSEFAFETLKKNRFLHKFLKEQPDSIYQAYIITINPEGLSFTVPEFCQEGF
IPSAQLPKEFSLKKKTSPDDLPPKMRPGAPIKVKLSEVNLLNQVITWSLATKTSNTIKKS
PASTKKTKEKKPRTRRKRNTE
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaagaatcagaaaaaaacgaccacaaagctttagaagaaactcgaaacaaatatta
atttccggcgtcctatttgttcatggaaaaaaaggtttcggttttgttacacccgaccac
ccagaagaatatccttttgatatttttattcccgcaagagatcttaaaggagccttagat
ggagatcacgttgtcgtctctcttttccccaattctaaagaaggagaaaaaagaaaagga
gtcattcaccaagtcatctctagaggcaaaactgttcttgtaggaacaataacctcactc
attgacgcctcaacagcgttcgtctgtgtgaatgctttgggcccagaaatccctgtaaaa
gcaaaacttattcctaaacgtgattataaaatcggcgatcgtttactactcagtactcct
gtatggaaggcaaaacctgaatccaaagaaccccctccgttggaaatgctcgaatttatt
gggaatatctccaacgctaagtccgattttccctgcataaaagctgaatatgggattcaa
gaagaattcccagaagctgttatcgaagaaacgaaccatttctcacaaaaacacattagc
caagcactaagatcacgaaaagatcttcgcaatctcctatgctttactattgactcaata
actgcaaaagacttcgatgatgccgtatccttaacctatgacaataacgataattacatc
cttggcgtccatattgcggatgtctcccactacgtaacacctcactccgctctagatcaa
gaagcaagcaaaagatgtaattctatctactttcctgggaaagtgattcctatgctcccc
cccgctctttcggataatctctgcagtttaaaacctaacgtcgatagactcgccgtttct
gtgttcatgacgtttacaaaatccggtcatttatccgattacgaaatattccgtagtgta
atccgtagtaaatatcgcatgacctatgatgaagtggacgagatcgtagaaaataaacaa
ccccaccctatagcaaaaactcttctcgctatggctgaactcagcgaaaaattctctgat
attagagaaaaacgtgggtgcatacgtcttgttcttccttcattcaccatgtctctagat
aacctacaagaacctgtaactcttatagaaacacgacaaacgctatcacataaactcatc
gaagagtttatgctcaaagctaatgaagtcgttgcttatcatatttcccaccaaggcgtt
tctctgccatttagaatccatgaatctcctaatgatgagagtttgctctctttccaagag
atcgccaaagctatgggatttgatattatcatgaccccagctcaagaacctgattttcaa
tacctattacaagagagctctgcaggacatcctctagagcccattctacattcacaattt
gttcgtagtatgaaaaccgcctcatactcaaccgaaaataaaggtcattatggtcttaaa
ttggatttctatacccacttcaccagccccatccgtcgctatatcgatcttattgttcat
agactcctcttcaaccccatgtctatagaagaaacccgtctagaacatattgtaagagca
tgctctactcaagagcgtatagccgcaaaatctgaatttgcttttgaaacccttaaaaaa
aatcgttttttacataagttcttaaaagaacaacccgactccatttatcaagcttacatc
atcacaatcaatcctgaaggtctctcatttaccgttccggaattttgccaagaaggattt
attccatccgcacaattacccaaagaattctctttgaaaaagaaaacatcccccgatgat
ctacctcctaaaatgcgtccaggagcccctataaaagtcaaactctctgaggtaaatctc
ctcaatcaagtgattacttggtcattggcaaccaaaacatcaaacacaataaaaaaatcc
ccagcgagcacgaaaaaaactaaggagaagaaacctagaactagaagaaaaaggaataca
gaataa
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