Entry |
|
Symbol |
rpoC
|
Name |
(GenBank) DNA-directed RNA polymerase subunit beta
|
KO |
|
Organism |
chc Chlamydia psittaci C19/98
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:chc00001]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CPS0C_0749 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:chc03021]
CPS0C_0749 (rpoC)
03400 DNA repair and recombination proteins [BR:chc03400]
CPS0C_0749 (rpoC)
Enzymes [BR:chc01000]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CPS0C_0749 (rpoC)
Transcription machinery [BR:chc03021]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CPS0C_0749 (rpoC)
DNA repair and recombination proteins [BR:chc03400]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CPS0C_0749 (rpoC)
|
SSDB |
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Motif |
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Other DBs |
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LinkDB |
|
Position |
complement(791075..795256)
|
AA seq |
1393 aa
MFGEGSRDNVSLSKEGLFDKLEIGIASDITIRDKWSCGEIKKPETINYRTFKPEKGGLFC
EKIFGPTKDWECCCGKYKKIKHKGIVCDRCGVEVTLSKVRRERMAHIELAVPIVHIWFFK
TTPSRIGNVLGMTASDLERIIYYEEYVVIDPGKTDLNKKQLLNDAQYREVIEKWGKDSFV
AKMGGEAIYDLLKSEDLQSLLKELKDRLRKTKSQQARMKLAKRLKIIEGFVSSSNHAEWM
VLKSVPVVPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKAILRLKTPEVIVRNEKR
MLQEAVDALFDNGRHGHPVMGAGNRPLKSLSEMLKGKNGRFRQNLLGKRVDYSGRSVIIV
GPELKFNQCGLPKEMALELFEPFIIKRLKDQGSVYTIRSAKKMIQRGAPEVWDVLEEIIK
GHPVLLNRAPTLHRLGIQAFEPVLIEGKAIRVHPLVCAAFNADFDGDQMAVHVPLSIEAQ
LEAKVLMMAPDNIFLPSSGKPVATPSKDMTLGIYYLMADPTYCPEEHGGKVKIFRDVTEV
LRALYSGGFLDEHTNGRRDETGRGIHIHEKIKVRIDGQVIETTPGRVLFNRIVPKELGFQ
NYSMPSKRISELILQCYKKVGLEATVRFLDDLKDLGFIQATKAAISMGLKDVKIPEIKSE
ILKEAYDKVAIVKKQYDDGIITDGERHSKTISIWTEVSELLSDALYVEISKQTKSKHNPL
FLMIDSGARGNKSQLKQLGALRGLMAKPNGAIIESPITSNFREGLTVLEYSISSHGARKG
LADTALKTADSGYLTRRLVDVAQDVIITEKDCGTLNHIEITAIRQGSEELLPLKDRIYGR
TVSEDIYQPGDKSKLLAKNGDVITSAQAELIDDAGIESIKIRSTLTCESRRGVCAKCYGL
NLANGRLIGLGEAVGIIAAQSIGEPGTQLTMRTFHLGGIAATSSTPEIVTDCDGILVYMD
LRVVVGQDGNHLVLNKKGAIHVVRDEGRSLEEYKKLLSTKSIESLETYPVELGVKILVGD
GEKVTAGQRIAEVELHNIPIICDKPGFVKYEDLVEGISTEKVVNKNTGLVELIVKQHRGE
LHPQIAIYSDPGLTELVGTYAIPSGAIVSVEENQKVDPGMLLARLPRGAIKTKDITGGLP
RVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHLIPLTKHLIVQ
RGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQ
MLQKVRITDPGDTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLGITKASLGTESF
ISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMGHMIPGGTGFDTHKRIKQYLEKEQEE
LVFDFVSESECAC |
NT seq |
4182 nt +upstreamnt +downstreamnt
atgtttggagaaggttctcgagacaatgtctctctatctaaagaggggctatttgataaa
ttagaaattggaattgcctcagatattactattcgcgataagtggtcttgtggggaaatc
aagaagcctgaaacaatcaattaccgtacgtttaaacctgaaaaaggtggactattttgc
gaaaagatttttggtcccacaaaggattgggaatgctgttgtggtaaatacaagaagatt
aagcataaaggtattgtttgtgatcgctgcggagtagaggttactctttctaaggttcgt
cgtgaacgtatggctcatattgagctggctgtgcctatcgtacatatatggttttttaag
actacaccatcaagaataggtaacgtcttaggaatgaccgcttctgatcttgaaaggatt
atttattacgaagaatatgtagttatcgatccaggtaagacagatttaaataaaaagcag
cttttaaatgatgctcagtatcgagaagtcattgagaagtggggaaaagattctttcgta
gccaaaatgggcggagaggctatctatgatttattgaaatcagaagatcttcaaagtcta
ttaaaagagcttaaggatcgtttgcgaaaaaccaaatctcagcaagccagaatgaaactt
gctaagcgattaaaaattatcgaaggttttgtctcttcttcgaatcacgctgagtggatg
gttttaaaaagtgttcctgtcgttccacccgatctacgtcctttagttccattagatggt
ggaaggtttgcaacttctgatttaaatgatctataccgtcgtgtaattaaccgaaataat
cgtttaaaagctattttaaggctaaaaactcctgaagtgatcgtacgtaatgaaaaacgt
atgttacaggaagccgtggacgctctatttgataacggtcgtcatggacaccctgtcatg
ggagcagggaatcgtccattaaaatccctttctgaaatgctaaaagggaaaaatggacgc
ttccgacaaaatcttttaggtaagcgtgttgattattctggacgttctgtcattatcgta
ggtcctgaattgaagtttaatcaatgcggtttgcctaaagaaatggctcttgagttgttt
gaaccgttcattattaaaagattaaaagatcagggtagtgtctatactattcgttctgct
aagaaaatgattcaacgtggagctcctgaagtttgggatgttctagaagaaattattaaa
ggccatccagtattgcttaaccgagcccccacactccaccgtttagggatacaggcgttt
gaacctgtattaatcgaaggtaaagcgattcgtgtgcatcccctagtctgtgcagcattt
aacgcggacttcgatggagaccaaatggctgttcacgtgccgctgtctatagaagcacaa
ttagaagccaaagttttgatgatggctcctgataacatcttcttgccgtcttctggaaag
cctgtcgctacaccttctaaggatatgaccttaggtatttactatctgatggcagacccg
acatattgcccggaagagcatggaggaaaagtcaaaatctttagggatgttacggaagtc
ttgcgagcattgtattctggcggattcctagatgagcatacaaatggtcgtcgcgatgaa
acaggccgtggtattcatattcacgagaaaattaaagtacgcatcgatggtcaggttatt
gaaactactccaggaagagttctgtttaatagaattgttcctaaagagttagggttccaa
aactatagcatgccaagtaagcgtatcagtgaattgattttacaatgctataaaaaagta
gggcttgaggctactgtacgcttcttagatgatcttaaagatttaggatttatccaagcg
acgaaagctgcgatctctatgggattgaaagatgtaaaaattcctgagattaaaagtgaa
attcttaaagaagcttatgacaaggttgccattgttaagaaacaatatgatgatggtatt
atcaccgatggtgaacgtcattctaaaactattagtatttggacagaggtttcagaactc
ttgtcagacgctctttatgttgaaattagtaagcaaactaaaagtaaacacaaccctctg
ttcttgatgatagattcaggagctcgaggtaataagtctcagttgaagcagttaggagct
ctacgaggtttaatggctaagccaaacggtgcgattatcgaatctccgattacctcgaac
ttccgcgaaggattaaccgttcttgagtattccatttcttctcacggtgctagaaaaggt
ttagctgatactgcattgaagacagctgactctggatatttaactcgaagacttgttgac
gtagctcaagatgtcatcattacggaaaaagattgcggaacattgaatcatatcgaaatt
actgcaattcgacagggttcagaagagcttctacctttaaaagatcgtatttatggtcgt
acggtatcagaagatatctatcaacccggtgataaaagtaagcttctagctaagaatgga
gatgtgattacatctgctcaggctgaacttattgatgatgctggaattgaaagtattaaa
atccgctctacacttacttgtgaaagtcgtcgtggtgtttgtgctaagtgttatgggtta
aaccttgctaatggtcgtctgattggtttaggagaagctgtgggtattatagctgctcaa
tccattggtgaacctggaacacagctaacgatgagaacgttccaccttggaggtatcgca
gctacatcttcaactccagaaattgttacagattgtgacggtatcctagtatacatggat
ctacgtgtggttgtgggtcaagatggaaatcacttagtcttgaataagaaaggtgctatc
catgttgtccgtgatgaaggacgtagtttagaagagtacaagaaacttctaagcaccaag
tctatagaaagtttagagacttatccggtagaactcggtgttaagattttagtaggtgat
ggggagaaggtaactgcaggccaaagaattgctgaggtcgagttacataatattccaatt
atctgtgataagcctggttttgtaaaatacgaagacttagtagagggtatttctacagag
aaagtagttaataagaacacaggtttagtcgagcttattgttaaacagcatcgtggagaa
ctgcatcctcaaattgctatttattctgatcccggtttgacggaattggttggaacatac
gctattccttctggagcgattgtttctgtcgaagaaaatcaaaaagtcgaccctggtatg
ttattagcaagattacctcgaggggcaattaagactaaggatattactggaggtctacct
agggttgctgaattagttgaagctcgtaagcctgaagacgctgcagatattgcaaagatt
gatggtgttgtagactttaaaggaattcagaaaaataaacgtattcttgttgttcgtgac
gaaataacaggaatggaagaagaacatctgattcctttgaccaagcacttgattgttcaa
cgtggagatcatgtgatgaagggacagcagctaacagatggtttggttgttccacatgaa
atcctagaaatttgtggcgttcgcgaattgcaaaagtacttagtcaatgaggttcaagaa
gtttatcgtttacagggtgtagacatcaatgataagcatgtagaaatcattgttcgtcaa
atgttgcagaaggttcgcattactgatccaggtgatactactttactcttcggagaagaa
gtaaataaaaaagaattctacgaagagaataaacgtacagaagaggaaggtggaaaacca
gcacaagctgttccagtattattgggaattaccaaagcttcgttgggtacagaatccttt
atttctgccgcatccttccaagatacgactcgggtattaactgatgctgcgtgtagtagt
aaaactgactacctgttaggattcaaagagaatgtcattatggggcatatgattcctgga
ggtacagggtttgatacacacaagcgtattaagcagtacttagaaaaggaacaagaggaa
cttgtctttgactttgtaagcgaatctgaatgcgcttgttag |