KEGG   Chlamydia psittaci C19/98: CPS0C_0942
Entry
CPS0C_0942        CDS       T01863                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
chc  Chlamydia psittaci C19/98
Pathway
chc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:chc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    CPS0C_0942 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chc03400]
    CPS0C_0942 (mfd)
Enzymes [BR:chc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     CPS0C_0942 (mfd)
DNA repair and recombination proteins [BR:chc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      CPS0C_0942 (mfd)
SSDB
Motif
Pfam: DEAD Helicase_C TRCF UvrB_inter CarD_TRCF_RID ResIII DUF3638 ERCC3_RAD25_C RecG_dom3_C AAA_30 ADDB_N AAA_19 UB2H PhoH
Other DBs
NCBI-ProteinID: AEG85900
LinkDB
Position
1000998..1004249
AA seq 1083 aa
MDFDPVNLNLSILPEITNTSVPLLIENILPGARSFLAAKFFYERKESVVMITTRSRIDDL
FEDLSSFLGFPPVEFPSSEIDLSPKLVNIDAVGKRDKVLYDLYQKKAPIFCVTTLKALLE
KTRSPKDTAHQHLDIQVGDVLDPDIMIDLCKNLGYRHETLASDKGEFAYRGGIIDIFPLS
SPEPFRIEFWGEKIISIRPFNPSDQLSTGKVSKLSISPATKNSGTEVLSHCLLDYFDTPP
AFLFDNLTLLEDDFSEISGTLSSLPNRFLPIQDLCRRAFQSQTIFFEEKNFPNVRTIKNT
QVNIEVFHCDIQASRLVAPFIYPNEVIDEQENPLLGFLQKLQEYIPNKGQPFNVALYNTK
AKSLKEARALIETLSQSSIHIYEKPGNLSSSFALVNERFAAISLAEFASTKVLRRQKQRN
YFSVTTEEVFVPIPGETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSD
QAYLISRYVGVSDKTPDLHNLNGSKWKRSRDLSEKSLILYAEKLLQLEAQRSTTPSFIYP
PHGEEVIKFEESFPYEETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVK
AVCDGQRQVIVMVPTTILANQHYETFTQRMAGLPINIAVLSRFSEGKALKKIFEDTAQGN
IDILIGTHKLINKNLEFKNPGLLIIDEEQRFGVKVKDFLKERYPTIDCLTVSATPIPRTL
YMSLSGARDLSLITMPPLDRLPVSTFVLEHNEETLSAALRHELLRGGQAYVIHNRIESIF
RLGNTIRNLVPEARIAVAHGQMSSDELASIFQKFKDQETNVLVATALIENGIDIPNANTI
LVDQADKFGMADLYQMKGRVGRWNRKAYCYFLVSHLDRLSGPAAKRLQALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAIGFNLYCKLLKKTVAALKNNSSPLLFNDDVKIEFP
YKSRIPDTYIDLASLRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPEEVLWLFALAHVR
LFALQHNISSIKGTGNALYIQQCHGKTEQIKKTLPYSLSPTPELLVAEVLESIEKAFPLK
TPR
NT seq 3252 nt   +upstreamnt  +downstreamnt
atggatttcgacccagttaatttaaacctatctattttacctgaaataactaacacctct
gttccattactaatagaaaatatccttcctggggctcgtagtttcttagctgctaagttt
ttctacgagaggaaagagtctgtggtaatgattaccacgcgctctcgtattgatgatctc
tttgaagatctttcttcatttttaggattccctcctgtggagtttccttcatcagaaata
gacttatctccaaagcttgttaatatcgatgctgttgggaaacgtgataaggttctttac
gatttgtatcagaaaaaagcccctatattttgtgtaacaacactaaaagctttactagag
aaaactcgatcaccaaaagatacagctcaccaacatttagatatccaagttggagatgtt
cttgatcctgatatcatgatcgatctatgtaaaaatttaggttatcgccatgaaactctt
gccagcgataagggagagtttgcttatagaggagggattattgatatctttcctctatct
tctccagaacctttccggatagagttttggggagaaaagatcatctcaatacgtcctttt
aatccatctgatcaactctcaacagggaaagtttccaagctgtctatatccccagccaca
aaaaattcggggacagaagttttatcacactgcctattggattattttgatacaccccca
gcatttctcttcgataatttaaccttgttagaagatgatttctcggagatttcagggacg
ttgtcttcgctacctaaccgttttctacctatccaagatttatgtcgacgtgcttttcaa
tctcagacgattttctttgaagagaaaaacttccctaatgttcgtacaattaaaaatacc
caagtaaacattgaagtcttccactgcgacattcaagcttcccgacttgttgctcctttt
atctatcctaacgaagttatcgacgaacaagaaaatccccttcttggttttctacaaaag
cttcaagaatatatccctaacaaaggacaaccgtttaacgtagccctctacaatacaaaa
gcaaaatctttaaaagaagctcgggctctaatagaaacgctaagccagagctctatacat
atctatgaaaaacctgggaatctctcttctagctttgctcttgtaaacgaaagatttgct
gctatttccctagcggaatttgcttctacaaaagtattgcgaaggcaaaaacagagaaat
tatttttccgtaactactgaagaagtattcgttcctattcctggagagacagttgttcat
ttacacaatggtattggcaaatttatcggaatggaaaagaagccaaaccatttaaatatt
gaaactgactatctagttcttgaatatgccgacaaagcacggctgtatgtgccttcagac
caagcctatctgatttcacgttacgtaggagtttctgacaaaactcctgaccttcataat
ctaaatggctctaaatggaaacgatctcgagatctctctgaaaagtctcttatattatat
gctgagaaactccttcagctcgaagcacagcgttccacgactccttcatttatttatcct
ccccatggagaagaggtaattaaattcgaagagagctttccttatgaagaaactccagat
caattgaaagcgattgagcaaatctattccgatatgatgtccgataagctcatggaccgt
ttaatttgcggtgatgcaggattcggaaagacggaagtcattatgcgagctgctgtgaaa
gcggtttgtgatggtcagcgacaggttattgttatggtccccacaaccattctagcaaat
cagcattacgaaactttcacccaacgtatggcagggttaccgataaatattgctgttctt
tcgcgcttttctgaagggaaggctctgaaaaaaatctttgaggatacagctcaaggcaat
attgatattttaatcggcacacacaagttaataaataaaaacttagaattcaaaaatcct
ggtttattgattattgatgaggaacaacgttttggtgttaaagttaaagatttcctcaag
gaacgttaccctacgatagactgtctcacagtatcagctacacctattccgagaacatta
tacatgtctttgtcgggagccagggacctctctttgattaccatgcctccattagataga
ctgcctgtttctacttttgttttagaacacaatgaagaaactctatctgcagccttacgg
cacgaattattgcgaggtggtcaagcatacgtaattcataatcgtattgagagcattttt
agattagggaatacaatacggaacttggtaccagaagcacgtattgctgttgctcatggc
caaatgtcttcagatgagttagcttctatttttcaaaaatttaaggatcaagaaaccaat
gtccttgtagcaacagcacttatagaaaatggtatcgatattcctaatgccaatacgatt
ttagtcgaccaagcagataaatttggcatggctgatctgtatcagatgaaaggtcgtgta
ggaagatggaatagaaaagcttactgttattttttagtttcccatttagatagattatct
ggtcctgctgcaaaacgtttacaagctttgaataaacaagaatatggaggaggaatgaag
atcgctctccatgatttagaaattcgtggcgcaggaaatattttaggaaccgatcaatcc
gggcatatcagtgcgattggattcaacctctactgtaagttattgaaaaaaacggttgct
gctttaaagaacaactcttctcctttattattcaacgatgatgtaaaaatagagtttcct
tataaatcccgcatacctgatacctatatagatttggcgtctctgcgtatagaattttac
cagaaaatcggtggtgctgaagatgccgaacagttagatttgataaaagaagagatgcgc
gatcgcttcgggcctctacccgaagaggtcttatggttatttgcattagctcacgtacgt
ctatttgctctacaacacaatatttctagcattaaaggtacggggaatgctttgtatatt
caacaatgtcatggaaaaaccgagcaaataaagaaaacattaccctattctttatctccc
accccagaactcctggtagctgaagtgttagaatctatagagaaagcatttcctctaaaa
acccctcgttaa

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