Caldicellulosiruptor hydrothermalis: Calhy_0612
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Entry
Calhy_0612 CDS
T01346
Name
(GenBank) RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily
KO
K02405
RNA polymerase sigma factor FliA
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd02020
Two-component system
chd02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Calhy_0612
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Calhy_0612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chd03021
]
Calhy_0612
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
chd02035
]
Calhy_0612
Transcription machinery [BR:
chd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Calhy_0612
Bacterial motility proteins [BR:
chd02035
]
Flagellar system
Flagellar assembly proteins
Stator
Calhy_0612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
HTH_23
HTH_29
HTH_3
HTH_17
PCI
HTH_38
Rv2175c_wHTH
HTH_24
UPF0122
HTH_10
HTH_28
Phage_terminase
DUF134
PhyR_sigma-like
HTH_Tnp_ISL3
HTH_AsnC-type
DUF1798
HTH_6
Sigma70_ECF
HTH_50
MarR_2
HTH_5
MarR
KORA
Motif
Other DBs
NCBI-ProteinID:
ADQ06353
UniProt:
E4QD58
LinkDB
All DBs
Position
661465..662211
Genome browser
AA seq
248 aa
AA seq
DB search
MGMDDALLWEKFIKTKDPKIKEQLIIKYMPLVKLVAGRMAIYFGGNVEYDDLVSYGSIGL
LDAIEKFDSQKGVKFETYAYTRIKGAIIDCVRSQDFLPRSIRQKAKEIEKAYIEIEKEGK
TPTDQEVAKRIGISVDELQKLQDRISSGMIISLDSFLEQNYESKIGGLEDFVSQPEHFIE
NEELKTVLRQQIDNLMENERMVIVLYYYEELSIKEIAKVLGVSESRVSQLHTRALLKLRS
ALQKYLEK
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atgggtatggatgatgcacttttgtgggaaaagtttataaagaccaaagacccaaaaata
aaagaacagcttataataaaatacatgccgcttgtaaagcttgtggctggcagaatggcc
atttattttggcggtaatgttgagtatgatgacttggtaagttatggttcaattggtctt
cttgatgcaatcgaaaagtttgacagtcaaaaaggggtcaagtttgaaacgtatgcatat
acaagaataaaaggtgcaataattgactgtgttagaagccaggactttttgccacgaagc
attcgacagaaagcaaaagagatagaaaaagcgtacattgagatagaaaaagaaggtaaa
accccgacagaccaggaagttgccaaaaggattggaatatcagttgatgaacttcaaaaa
ctgcaggatagaatatcgagtggtatgattatttcactggatagttttttagaacagaac
tatgaaagcaagattggcgggcttgaagatttcgtgtcccagccagaacattttatagag
aatgaagaacttaaaactgtgttaagacagcagatagataatcttatggagaatgaaagg
atggtgatagtgctttattactatgaagagctgagcataaaagagatagcaaaagttctg
ggcgtatctgaatcacgtgtaagtcagcttcacacgcgagcgcttttaaagttgagaagt
gctttacaaaagtatttggaaaaataa
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