Caldicellulosiruptor hydrothermalis: Calhy_0940
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Entry
Calhy_0940 CDS
T01346
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03030
DNA replication
chd03430
Mismatch repair
chd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Calhy_0940
03430 Mismatch repair
Calhy_0940
03440 Homologous recombination
Calhy_0940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chd03032
]
Calhy_0940
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_0940
Enzymes [BR:
chd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Calhy_0940
DNA replication proteins [BR:
chd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Calhy_0940
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Calhy_0940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_finger
HHH_6
Rv2179c-like
RNase_H_2
DEDDh_C
HHH_3
DNA_pol_A_exo1
T2SSK
DUF655
tRNA_anti-codon
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
ADQ06669
UniProt:
E4Q7M9
LinkDB
All DBs
Position
975746..979954
Genome browser
AA seq
1402 aa
AA seq
DB search
MSEALFLPVKPVKIEFDKSSMDLKVYVESLDNLKDIDLIGIEQRFKSLLESCRDVEIKLF
KTRNLTLEELLKKYRWFLFYKISKRCNGLSHFLRECEIVQSSSGLDFLVPNGIRDILFER
KVDVLVKQILSEEFGIVCDVDFKIKDFFIQFDTDQEVEKYLKLSEEKKEETEKITSEKSE
VETDPTIIFGKKIDEKKEVTPISLVKVGTDCVIEGEIFNLEIKETKNQNVLIYKLYITDY
LNSTFVKIVAKKDKIPTSISVGDYVKVEGRVEFDDFEKAVVVNAKNINKSQKPQRLDTSD
NKRVELHAHTKMSAMDAVCSAEEIIKLAASMGHRAVAITDHGVVQAFPEAQEASKSCNIK
VIYGMECYLIDDGAPVVYNPKEGQGFDSTFVVVDIETTGFDSQRDRIIEIGAVKIENGQI
TEKFSTFVDPEGKIPVRISELTGIYQDMVDKAPKLSDAILEFEKFASGSVLVAHNAQFDI
GFLKKAYQECGIIFDYTYIDTLELSRRLLTDLSSHKLNKVAEFLNVELKHHHRADSDAET
TAGIFISLVERLKARGYKWLKELNSIESNAKADLKSHSYHATILVKNQQGLKNLYKLVSY
SHLEYFYKRPRIPKSLLIQLKDGLLIGSACESGEIFRAFLEGKSEEEIEKIAAFYDFLEI
MPVENNSFLIREGYLKDEEDLREINKKIYNLGKKLGKLVVATSDAHYCHPHQRVLRQILK
HNQGYDDVENDPQLYFRTTDEMLKEFDYLGNESCYEVVVENTNKIADMIEDIKPIPDETF
PPKIEGAEEEIYNMTMKKAHEIYGDPLPEIVRARLEKELNSIIKNGFAVMYLIAQKLVSK
SLSDGYLVGSRGSVGSSLVATMCGITEVNPLPPHYVCPNCKYSEFITDGSVGCGYDLEDK
NCPRCGKKLKKDGHDIPFETFLGFDGDKEPDIDLNFSGDYQPIAHKFTEELFGQGYVFRA
GTISTVAEKTAHGFVTKYAEEKGLNLHPAEILRLSQGCTGVKRTTGQHPGGLMIVPRDKE
IFDFTPIQHPADSGDKSVITTHFDYHAISGRLLKLDILGHDDPTVIRMLQDLTGVDPRSI
PLDDKDTMSIFTSTEALGISPEDIDCEVGTFGIPEFGTRFVRQMLIETKPKTFAELVRIS
GLSHGTNVWTNNAQDLVRNGIATLKEVISTRDDIMLYLIQKGVPPKDSFRIMEDVRKGKG
LKPEDEQLLRAHNVPDWYIESCKKITYMFPKAHAAAYVMMAFRIAYFKVHYKEAFYATYF
TVRADDFDYATILKGRDAIRQKIRDLENRISSLSQKDKNLLTVLEIANEMLARGLKFYPV
DLNESDAERFIIKDGGLLIPFNALPNVGVAAAKSIVEARKEGRFLSVDDLIRRAKLNKQV
IEILTQYKVLKDLPQTSQLSFF
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaggctctatttttgccagtaaaacctgtcaagattgagtttgacaaatcaagt
atggatcttaaggtttatgttgagagccttgataacctgaaagatattgacctcattgga
attgagcaaagattcaagtctcttttagaaagttgcagggatgttgagataaaacttttc
aaaaccagaaacctgacgttggaagaacttttgaaaaaatatagatggtttttgttttat
aaaatttcaaaaagatgtaacggtcttagccattttttgagagaatgcgagattgtgcaa
agttcaagcggcttagattttttggttccaaatggtatcagagatattctttttgaaaga
aaagtagatgtgcttgtaaagcaaatactgtctgaagagttcggaatagtatgcgacgtg
gattttaagattaaagacttttttatccagtttgacacagaccaagaagtagaaaaatat
ctaaagcttagcgaggaaaagaaagaagaaactgaaaaaattacaagtgaaaagagtgag
gttgagacagacccgaccattatatttggcaaaaagatagatgaaaagaaagaggtaact
cctatttctcttgtcaaagttggtactgattgcgtgatcgaaggtgaaatttttaatctt
gagataaaagagactaaaaaccagaatgtgctcatatacaagctttacatcacagactat
ttaaattcaacctttgtaaaaattgttgccaagaaagataaaattcctacttcaatttct
gttggagattatgttaaggttgaaggcagggtagaatttgacgattttgaaaaagcggtt
gtggtgaatgctaaaaacataaacaaaagtcaaaaacctcagcgacttgatacaagcgat
aacaagagagtagaacttcatgctcacaccaaaatgtctgctatggatgctgtgtgctct
gcagaggagattataaaattggcagcttcaatgggacacagagcagttgcgataacagac
catggagttgttcaggcgtttccggaagcacaggaggctagcaaaagctgtaatatcaaa
gttatctatgggatggaatgctatcttattgatgatggcgcgccagttgtttacaatcct
aaggaaggacaaggatttgactctacctttgtggttgttgacattgaaacaacagggttt
gacagtcaaagagatagaataatagaaattggtgctgtgaagatagaaaacggtcaaata
acagagaaattttctacatttgttgaccccgaaggcaaaatccctgtcaggatatcagag
ctaacaggcatataccaagatatggttgataaagccccaaagctgagtgatgccattttg
gagtttgaaaagtttgcaagcggcagcgttcttgttgcgcacaacgctcagtttgacatt
ggatttttgaaaaaggcgtaccaggaatgtggaattatattcgactatacatatatcgat
acgctggaactttcaagaaggcttttgacagatctgtcttctcataagttaaacaaagtt
gcagagtttttaaatgtagagttaaaacatcatcacagagctgattctgacgcagaaaca
acagctggtatctttatttctcttgtggaaagattaaaagcaagagggtacaaatggtta
aaagaacttaattcaattgagtcaaacgcaaaagcagacctcaaatctcacagctatcat
gcaactatacttgtaaagaaccagcaggggttaaaaaatctctacaaactggtatcgtat
tctcatttagaatacttctacaaaaggccaaggatacccaaaagtcttttgatacaatta
aaagatggacttttgataggaagtgcgtgtgagtctggtgaaattttcagggcctttttg
gaagggaaaagtgaggaagagatagaaaagatagcagcattttatgatttccttgagata
atgccggttgagaataattcttttttgattagagaaggatacttaaaagatgaagaagat
ttaagagaaatcaataaaaagatttacaatcttggcaaaaaacttggcaagcttgttgtt
gcgacatctgatgcgcactattgtcatccacaccagagagtgttgcgccagattttaaaa
cataaccaagggtacgatgatgttgaaaatgacccgcagctttatttcaggacaacagat
gagatgctcaaagaatttgattatctgggaaatgaatcttgttatgaagttgttgtagaa
aataccaataagattgccgatatgatagaagatataaaaccaatacccgatgagactttc
ccacccaagattgagggtgctgaggaagaaatatacaacatgacaatgaagaaagctcac
gaaatatatggagaccctcttccggaaattgtaagagcacggcttgaaaaggaactgaat
tcgataatcaagaatggttttgcggtgatgtatttgattgcccaaaaacttgtatctaaa
tctttgtcagacggttatcttgttggttcgcgagggtctgttggttcttctcttgttgca
acaatgtgtggaataacagaggtaaatccactgcccccacattatgtttgtccaaactgc
aagtattctgagtttataacagatggttctgttggatgtggttatgacttagaagacaaa
aactgtccacgctgtgggaaaaaacttaaaaaagatgggcacgacataccgtttgagacc
ttcttggggtttgatggggataaagagcctgatattgaccttaacttttctggtgattat
cagccaattgcacacaagtttacagaggagctgtttggacaaggctatgttttcagagca
ggtacaatctcaacagttgctgaaaagactgcacatggttttgtgacaaagtatgctgag
gaaaaaggtttgaatcttcatcctgcagagattttgagactttctcagggttgcacagga
gtaaaaagaacaacaggccagcatcccggcgggctcatgattgttccaagagacaaagag
atatttgattttacaccaatccagcatccggcagatagcggggacaaaagcgttatcaca
acgcactttgattaccatgctatctcaggaagacttttgaagcttgatattcttggccac
gacgacccgactgtcatacgaatgctccaggacttgacgggagttgacccgcgttcaatt
cctcttgatgacaaagatacgatgtcaatttttacaagcacagaagctcttggaatttct
cctgaggacatagattgtgaagtagggactttcggtatacctgagtttgggacaaggttt
gtaagacagatgttaattgagacaaaaccaaagacgtttgccgagcttgttcgtatttca
ggtctttcacacggcacaaatgtgtggacaaacaatgctcaggatttagtaagaaatgga
attgcaacgctcaaagaggtaatttctacaagagacgatattatgttatatttaattcaa
aagggtgttccaccaaaagacagttttagaatcatggaagatgttagaaaaggtaaagga
ttaaagccggaggatgagcagcttctaagagctcacaatgttccggactggtatatagag
agctgcaaaaagataacgtacatgtttccaaaagcacatgctgcagcgtatgtaatgatg
gcgttcaggattgcttatttcaaggtacattataaggaggctttctatgcaacatatttt
acagtcagagcagacgactttgattatgcaacaatcctcaaggggagagacgctataagg
cagaagataagagatttggaaaataggataagtagtctttctcagaaagacaaaaacctt
ctgacagtgcttgagattgcaaacgagatgttagcacgaggtctaaagttttaccctgtt
gatttgaacgagtctgatgcagagaggttcatcataaaagatggagggcttttaataccc
tttaatgctctgccaaatgttggagtggcagctgcaaaaagtattgttgaggcacgaaaa
gaaggaaggtttttgtctgtggatgaccttataagacgtgcaaagctgaacaagcaggtt
atagagattttgactcagtataaagtgttaaaagacttgcctcaaacaagccagctaagc
tttttctaa
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