Caldicellulosiruptor hydrothermalis: Calhy_1031
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Entry
Calhy_1031 CDS
T01346
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
chd
Caldicellulosiruptor hydrothermalis
Pathway
chd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
chd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Calhy_1031
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chd03021
]
Calhy_1031
03400 DNA repair and recombination proteins [BR:
chd03400
]
Calhy_1031
Enzymes [BR:
chd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Calhy_1031
Transcription machinery [BR:
chd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Calhy_1031
DNA repair and recombination proteins [BR:
chd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Calhy_1031
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_XRCC3_RpoA
HHH_5
RAD51D_N
TfoX_C
Motif
Other DBs
NCBI-ProteinID:
ADQ06759
UniProt:
E4Q843
LinkDB
All DBs
Position
1051258..1052232
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AA seq
324 aa
AA seq
DB search
MIEFQKPTIRCEELSPDNKYGRYVIEPLERGYGITVGNALRRTLLSSLPGAAVTAVKIDG
VLHEFSTIPGVLEDVPEIILNLKGLAIKMSSPGPKVMYIEAQGECEVKAKDIKADADIEI
CNPDHHIATLNSDARLFMEITVNQGKGYVPAERNKQPNQPIGVIPVDSIYTPVVKVNYKV
ENTRVGQVTDYDKLTMEIWTNGTIRPDEALTVAAKILIEHFNLFTDLSNIPTKIETVVKQ
EPPKRNKLLDMTIEELELSVRSYNCLKRAGINTVEDLVNKTEEEMMKVRNLGKKSLEEVI
QKLHSLGLSLKKSDSTPKEEEEEK
NT seq
975 nt
NT seq
+upstream
nt +downstream
nt
ttgatagaatttcaaaaaccaacaataaggtgtgaagagctgagcccagacaataaatat
gggcgatatgttattgagcctctggaaagaggttatggtataacagttggtaatgcgctt
agaagaacacttttgtcgtcactacctggtgcagcagtcacagcagttaagattgatggg
gttttacatgagttttcgacaattccaggggtcttagaagatgtaccagagataatactc
aatttaaaaggcttggctatcaagatgtcatccccagggccaaaggtaatgtacattgag
gctcagggtgaatgtgaagtaaaagcaaaagatataaaggcagatgctgatatagagatt
tgcaatccagaccatcatattgccactcttaactctgacgcaagactttttatggagata
acagtaaatcaagggaaaggttatgtcccggctgaaagaaacaaacagccaaaccagcca
ataggtgttatccctgttgattctatttatacgcctgttgtaaaggtcaactacaaggtt
gaaaatacaagagttggtcaggtaaccgactatgataagttgactatggagatatggaca
aacggaactattcgtccagatgaggcgctaaccgttgccgcaaagattttaatagagcat
tttaacctgtttactgatctttctaatattcctacaaagattgagacagttgtaaaacaa
gagccgccgaagagaaataaacttttagatatgaccatagaagagcttgagctttcagta
aggtcatacaactgtcttaaaagagcggggataaacacagttgaggaccttgtcaacaag
actgaagaagagatgatgaaggtaaggaacttgggcaaaaagtccttagaagaggtcatc
caaaaacttcacagtttaggacttagcctcaaaaagagtgatagcacgccgaaggaggag
gaagaagagaaatga
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